Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV24_RS20780 Genome accession   NZ_AP025497
Coordinates   2984766..2985479 (+) Length   237 a.a.
NCBI ID   WP_167514280.1    Uniprot ID   -
Organism   Vibrio kanaloae strain LMG 20539     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2979766..2990479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV24_RS13425 - 2980690..2983020 (+) 2331 WP_150879090.1 Tex family protein -
  OCV24_RS13430 - 2983229..2983702 (-) 474 WP_017055619.1 hypothetical protein -
  OCV24_RS13435 bioH 2983896..2984672 (-) 777 WP_017055618.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV24_RS20780 comF 2984766..2985479 (+) 714 WP_167514280.1 ComF family protein Machinery gene
  OCV24_RS13445 nfuA 2985589..2986173 (+) 585 WP_029626881.1 Fe-S biogenesis protein NfuA -
  OCV24_RS13450 nudE 2986467..2987018 (+) 552 WP_150879092.1 ADP compounds hydrolase NudE -
  OCV24_RS13455 cysQ 2987076..2987903 (+) 828 WP_017055615.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV24_RS13460 - 2988023..2988802 (-) 780 WP_136979602.1 type II secretion system protein N -
  OCV24_RS13465 - 2988804..2989292 (-) 489 WP_017055613.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27323.61 Da        Isoelectric Point: 9.0472

>NTDB_id=92164 OCV24_RS20780 WP_167514280.1 2984766..2985479(+) (comF) [Vibrio kanaloae strain LMG 20539]
MLSDWLQKHTPHLVTSQCHLCKLEKLLSDTHPRWCQTCLDLFCQQPRCQQCGLKTLTNVEQCGQCLSNPPPWHRLYCVGD
YVFPTARYIQQMKYADKFWFARDLSKLLAPRIQHPAPLITSVPLHWGRYIHRGFNQSQLLAHYTAQELNVKSAVLFRRSR
STVSQQGLTKSARQINLKNAFTLRNMNFSTNNYSHIAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=92164 OCV24_RS20780 WP_167514280.1 2984766..2985479(+) (comF) [Vibrio kanaloae strain LMG 20539]
ATGTTATCCGATTGGCTACAAAAACACACACCGCATCTGGTCACATCACAATGCCACCTGTGCAAGCTAGAAAAGCTCCT
CAGCGATACTCATCCTCGGTGGTGCCAAACTTGCCTCGATCTCTTTTGCCAACAGCCACGCTGCCAGCAATGTGGCTTGA
AAACCTTAACTAACGTCGAGCAATGTGGTCAATGTCTATCGAACCCACCACCTTGGCATCGTCTCTATTGTGTGGGTGAC
TACGTCTTTCCAACAGCACGCTATATCCAACAAATGAAATACGCCGATAAGTTCTGGTTCGCTCGCGATTTATCAAAATT
GTTAGCGCCACGTATTCAGCACCCAGCGCCATTGATAACCAGTGTGCCTCTACATTGGGGGCGGTATATTCATAGGGGCT
TTAATCAGAGTCAGTTATTAGCCCATTACACAGCCCAGGAACTGAACGTTAAAAGTGCAGTTTTATTTCGTCGATCTCGT
TCAACGGTTTCGCAGCAAGGATTAACCAAATCCGCAAGGCAGATCAATCTAAAAAACGCTTTCACGCTGCGCAATATGAA
TTTTTCAACGAACAATTATTCTCACATCGCGATAATTGATGATGTTGTAACCACAGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGGACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

54.237

99.578

0.54
  comF Vibrio campbellii strain DS40M4

47.737

100

0.489

Multiple sequence alignment