Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB3445_RS04435 Genome accession   NZ_CP162422
Coordinates   872340..873113 (-) Length   257 a.a.
NCBI ID   WP_341270941.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22723     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 867340..878113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3445_RS04400 (AB3445_04400) - 867593..868363 (-) 771 WP_000473705.1 isoprenyl transferase -
  AB3445_RS04405 (AB3445_04405) frr 868736..869290 (-) 555 WP_001280006.1 ribosome recycling factor -
  AB3445_RS04410 (AB3445_04410) pyrH 869309..870031 (-) 723 WP_000057330.1 UMP kinase -
  AB3445_RS04415 (AB3445_04415) tsf 870168..871049 (-) 882 WP_000201387.1 translation elongation factor Ts -
  AB3445_RS04420 (AB3445_04420) - 871084..871197 (-) 114 WP_001789890.1 hypothetical protein -
  AB3445_RS04425 (AB3445_04425) rpsB 871231..871998 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  AB3445_RS04430 (AB3445_04430) - 872197..872289 (-) 93 WP_001790530.1 hypothetical protein -
  AB3445_RS04435 (AB3445_04435) codY 872340..873113 (-) 774 WP_341270941.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB3445_RS04440 (AB3445_04440) hslU 873138..874541 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  AB3445_RS04445 (AB3445_04445) hslV 874607..875152 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  AB3445_RS04450 (AB3445_04450) xerC 875149..876045 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  AB3445_RS04455 (AB3445_04455) trmFO 876462..877769 (-) 1308 WP_050959995.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28785.22 Da        Isoelectric Point: 6.0680

>NTDB_id=921365 AB3445_RS04435 WP_341270941.1 872340..873113(-) (codY) [Staphylococcus aureus strain TUM22723]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGMEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=921365 AB3445_RS04435 WP_341270941.1 872340..873113(-) (codY) [Staphylococcus aureus strain TUM22723]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTATGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428