Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   VOI49_RS03810 Genome accession   NZ_CP142018
Coordinates   729401..730267 (+) Length   288 a.a.
NCBI ID   WP_264164363.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 724401..735267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS03785 atpD 725437..726843 (+) 1407 WP_003050137.1 F0F1 ATP synthase subunit beta -
  VOI49_RS03790 - 726856..727272 (+) 417 WP_003050138.1 F0F1 ATP synthase subunit epsilon -
  VOI49_RS03795 - 727601..727837 (+) 237 WP_277997757.1 DUF1146 family protein -
  VOI49_RS03800 murA 727902..729173 (+) 1272 WP_003050140.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  VOI49_RS03805 - 729177..729365 (+) 189 WP_003050141.1 DNA-directed RNA polymerase subunit beta -
  VOI49_RS03810 endA 729401..730267 (+) 867 WP_264164363.1 DNA/RNA non-specific endonuclease Machinery gene
  VOI49_RS03815 pheS 730550..731593 (+) 1044 WP_003050143.1 phenylalanine--tRNA ligase subunit alpha -
  VOI49_RS03820 pheT 731803..734208 (+) 2406 WP_003050144.1 phenylalanine--tRNA ligase subunit beta -
  VOI49_RS03825 - 734321..734698 (+) 378 WP_003050145.1 OsmC family protein -
  VOI49_RS03830 - 734691..735077 (+) 387 WP_003050146.1 YbgA family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31848.91 Da        Isoelectric Point: 10.0305

>NTDB_id=921019 VOI49_RS03810 WP_264164363.1 729401..730267(+) (endA) [Streptococcus dysgalactiae strain lu24]
MLIRKKQKKVLNSFLLILLVLGSSYLAKSDFIASNHPIKQIYRTVLGDKGESSSESKEVHSEVPTEALSASVLTKSIKEQ
LASDIEWNGAGAYIINRNKTDLTASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=921019 VOI49_RS03810 WP_264164363.1 729401..730267(+) (endA) [Streptococcus dysgalactiae strain lu24]
ATGTTAATAAGGAAAAAACAAAAAAAGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAATCACCCTATTAAGCAAATTTATCGTACCGTTTTGGGAGATAAGGGTGAATCATCAT
CAGAATCAAAAGAAGTCCATAGTGAGGTTCCCACAGAAGCCCTATCCGCTTCTGTCTTAACCAAATCCATTAAGGAACAA
TTAGCTTCCGATATTGAATGGAATGGAGCAGGCGCCTATATTATCAACAGGAACAAAACAGATTTAACCGCAAGCGTAGC
CAGTCTGCCCTATGCCAATAATGAAACCAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGGAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGATCATGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTTGGTGGACTGAAAGG
TTTTGATGCTTCTACCAGTAATCCTGATAATATTGCCACTCAACTAAGTTGGGCCAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGCTTAGTACGTCGTGCATTGGATAAGGGTAAAAGGGTCCGTTATCGTGTTACCTTGCTT
TATGATGGTGATAATCTCTTAGCCAGTGGTAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTCCAAGCAGGGCTGACGGTTGATTATCGAACAGGACAGATTGCCATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(122-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.338

80.208

0.5
  endA Streptococcus pneumoniae D39

62.338

80.208

0.5
  endA Streptococcus pneumoniae R6

62.338

80.208

0.5
  endA Streptococcus pneumoniae TIGR4

62.338

80.208

0.5