Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VFH86_RS00905 Genome accession   NZ_CP142014
Coordinates   187812..188672 (-) Length   286 a.a.
NCBI ID   WP_001905608.1    Uniprot ID   -
Organism   Vibrio cholerae strain LK-18     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182812..193672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFH86_RS00875 (VFH86_00875) gspL 183070..184281 (+) 1212 WP_001288744.1 type II secretion system protein GspL -
  VFH86_RS00880 (VFH86_00880) gspM 184291..184788 (+) 498 WP_000661347.1 type II secretion system protein GspM -
  VFH86_RS00885 (VFH86_00885) - 184790..185548 (+) 759 WP_000817146.1 type II secretion system protein N -
  VFH86_RS00890 (VFH86_00890) cysQ 185600..186427 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VFH86_RS00895 (VFH86_00895) nudE 186450..186998 (-) 549 WP_000095818.1 ADP compounds hydrolase NudE -
  VFH86_RS00900 (VFH86_00900) nfuA 187137..187724 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  VFH86_RS00905 (VFH86_00905) comF 187812..188672 (-) 861 WP_001905608.1 ComF family protein Machinery gene
  VFH86_RS00910 (VFH86_00910) bioH 188608..189369 (+) 762 WP_345658019.1 pimeloyl-ACP methyl ester esterase BioH -
  VFH86_RS00915 (VFH86_00915) - 189613..190083 (+) 471 WP_000961393.1 hypothetical protein -
  VFH86_RS00920 (VFH86_00920) - 190178..192499 (-) 2322 WP_095463579.1 Tex family protein -
  VFH86_RS00925 (VFH86_00925) greB 192744..193226 (+) 483 WP_000850492.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32559.49 Da        Isoelectric Point: 8.0588

>NTDB_id=920917 VFH86_RS00905 WP_001905608.1 187812..188672(-) (comF) [Vibrio cholerae strain LK-18]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCIGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANMLNVEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=920917 VFH86_RS00905 WP_001905608.1 187812..188672(-) (comF) [Vibrio cholerae strain LK-18]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTATCGGCGATTACCGCTTTCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCCGCCCCGTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATATGCTGAACGTTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

99.65

100

0.997
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392