Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   VML59_RS20035 Genome accession   NZ_CP142003
Coordinates   3850454..3852790 (-) Length   778 a.a.
NCBI ID   WP_074567756.1    Uniprot ID   A0A1Y5ZG87
Organism   Bacillus pacificus strain AT31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3845454..3857790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VML59_RS20010 - 3848116..3848460 (+) 345 WP_000209593.1 PH domain-containing protein -
  VML59_RS20015 - 3848496..3849566 (-) 1071 WP_000793116.1 AI-2E family transporter -
  VML59_RS20020 - 3849742..3849954 (+) 213 WP_000242550.1 hypothetical protein -
  VML59_RS20025 - 3849991..3850119 (-) 129 WP_001053553.1 YrzQ family protein -
  VML59_RS20030 - 3850138..3850326 (-) 189 WP_000469281.1 hypothetical protein -
  VML59_RS20035 recD2 3850454..3852790 (-) 2337 WP_074567756.1 ATP-dependent RecD-like DNA helicase Machinery gene
  VML59_RS20040 - 3852886..3853545 (-) 660 WP_000066391.1 tetratricopeptide repeat protein -
  VML59_RS20045 mnmA 3853656..3854771 (-) 1116 WP_001038008.1 tRNA 2-thiouridine(34) synthase MnmA -
  VML59_RS20050 - 3854788..3855933 (-) 1146 WP_074567757.1 cysteine desulfurase family protein -
  VML59_RS20055 cymR 3855969..3856385 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -
  VML59_RS20060 - 3856678..3856977 (+) 300 Protein_3899 AAA family ATPase -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87399.90 Da        Isoelectric Point: 5.2015

>NTDB_id=920823 VML59_RS20035 WP_074567756.1 3850454..3852790(-) (recD2) [Bacillus pacificus strain AT31]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLSVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLANRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=920823 VML59_RS20035 WP_074567756.1 3850454..3852790(-) (recD2) [Bacillus pacificus strain AT31]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGGCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTAGGGGAACATGCTATTTCTAAAATTATGGATG
ATCCTGAGGCTTTAAATGGTGTTGTAAACAAGCAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAACAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCATATCAGCTTATTGAAGAAGTGGATGGAATTGGATTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGGATATCGGGTAATCATGATGATCGTGTACGTGCGGGATGTTTTTATACGTTAGAGAATGTATCA
TTACAACTTGGTCACGTTTATATGAGAAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACGGAGGAAGACATTATAGGTTGTATTGAAATGATGCAAAGTGAAGGGAAAGTTATTATTGAAGAAGAACGAGTGT
ATTTGGCATCGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTCATGAATCAGGAGGAAACACCTTCA
TTCCCTGAAGCAGAAGTGTTAAAGACGTTAGGTGAAATTGAAGAACAACTGAGCGTACAGTATGCACCACTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGAAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCCCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGTCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACGGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TCTCAATGGTTGATATTTGGCTTGCAAATCAGCTATTTAAGTCATTGCCCACGAACATTCAAGTTATCGTTGTAGGAGAT
GAAGATCAATTGCCATCTGTAGGACCTGGACAAGTGCTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAGGCGGAAGGCTCATCAGTTATTCAACTTGCCCATGCGATAAAAAATGGAACACTCCCTCCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAAAAGGTTTGT
GAAAATGCTAAGACAAAAGGATTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCCGGTATTAA
TGTATTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTCTTGCAACTTGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGCGAAATTGTT
TCGGTGTTTTATGCGAAAGAGAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAATCGCAAGGCAGTGAGTTTCCGATTGTGA
TTATGCCGATAGTAAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCCGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAATCGCTTGCAGGAATCGCAAGGAGAAGTACAGATGGTAACAGTGAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y5ZG87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.269

100

0.582