Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV56_RS00675 Genome accession   NZ_AP025492
Coordinates   144742..145455 (-) Length   237 a.a.
NCBI ID   WP_167373141.1    Uniprot ID   -
Organism   Vibrio gigantis strain LMG 22741     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 139742..150455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS00650 - 140955..141443 (+) 489 WP_086711667.1 type II secretion system protein M -
  OCV56_RS00655 - 141445..142224 (+) 780 WP_086711669.1 type II secretion system protein N -
  OCV56_RS00660 cysQ 142345..143172 (-) 828 WP_086711671.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV56_RS00665 nudE 143207..143758 (-) 552 WP_061033119.1 ADP compounds hydrolase NudE -
  OCV56_RS00670 nfuA 144048..144632 (-) 585 WP_026084098.1 Fe-S biogenesis protein NfuA -
  OCV56_RS00675 comF 144742..145455 (-) 714 WP_167373141.1 ComF family protein Machinery gene
  OCV56_RS00680 bioH 145549..146325 (+) 777 WP_086711673.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV56_RS00685 - 146681..147154 (+) 474 WP_086711675.1 ATP-dependent Lon protease -
  OCV56_RS00690 - 147296..149626 (-) 2331 WP_086711680.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27147.36 Da        Isoelectric Point: 8.4884

>NTDB_id=92079 OCV56_RS00675 WP_167373141.1 144742..145455(-) (comF) [Vibrio gigantis strain LMG 22741]
MLSDWLQKHTPRLVTPQCHLCKLDKPPDNAHPRWCDSCLKLFDPVPRCQRCGLKTVTTVEQCGECLSEPPPWHRLYCIGD
YTFPIAGYIQQMKYADKFWFARDLSTLLASRIEEPASLVTSVPLHWRRYFHRGFNQSQLLAHYTAHELLVDHAVLFKRIR
STVTQQGLNKSARKSNLKGAFAIRNTNFSSIDYPHVAVIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=92079 OCV56_RS00675 WP_167373141.1 144742..145455(-) (comF) [Vibrio gigantis strain LMG 22741]
ATGTTATCTGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACCTGTGCAAGCTAGATAAGCCTCC
CGACAACGCCCACCCTCGATGGTGCGATTCTTGTCTCAAACTCTTTGATCCAGTACCACGCTGTCAGCGATGTGGCTTAA
AAACCGTCACTACCGTCGAGCAGTGTGGTGAGTGCTTATCAGAACCGCCTCCTTGGCATCGGCTTTATTGTATCGGTGAT
TACACCTTTCCAATCGCAGGCTATATCCAACAGATGAAGTATGCCGATAAATTCTGGTTTGCCCGGGATTTGTCGACCTT
GCTCGCATCACGTATCGAAGAGCCAGCATCACTGGTCACCAGTGTTCCCTTGCATTGGCGTCGATACTTTCATCGCGGTT
TTAATCAGAGTCAGTTGTTAGCGCATTACACCGCTCACGAACTCCTGGTGGACCATGCCGTTTTATTCAAACGCATCCGC
TCAACCGTTACGCAGCAAGGGCTAAATAAATCAGCGAGAAAAAGTAACTTGAAAGGGGCATTCGCGATACGAAACACCAA
CTTTTCATCGATCGATTACCCGCATGTAGCGGTAATTGATGATGTTGTAACCACAGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTAGGGGTAAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAACCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.966

99.578

0.527
  comF Vibrio campbellii strain DS40M4

50.206

100

0.515

Multiple sequence alignment