Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VKS18_RS08165 Genome accession   NZ_CP141895
Coordinates   1615437..1616216 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain B004     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610437..1621216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKS18_RS08145 (VKS18_17570) trmFO 1611124..1612431 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VKS18_RS08150 (VKS18_17575) xerC 1612501..1613418 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  VKS18_RS08155 (VKS18_17580) hslV 1613434..1613979 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  VKS18_RS08160 (VKS18_17585) hslU 1613996..1615399 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  VKS18_RS08165 (VKS18_17590) codY 1615437..1616216 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VKS18_RS08170 (VKS18_17595) flgB 1616570..1616959 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  VKS18_RS08175 (VKS18_17600) flgC 1616959..1617411 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  VKS18_RS08180 (VKS18_17605) fliE 1617422..1617742 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  VKS18_RS08185 (VKS18_17610) fliF 1617785..1619395 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  VKS18_RS08190 (VKS18_17615) fliG 1619408..1620424 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  VKS18_RS08195 (VKS18_17620) fliH 1620417..1621172 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=920360 VKS18_RS08165 WP_003154263.1 1615437..1616216(+) (codY) [Bacillus velezensis strain B004]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=920360 VKS18_RS08165 WP_003154263.1 1615437..1616216(+) (codY) [Bacillus velezensis strain B004]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471