Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | OCU78_RS00690 | Genome accession | NZ_AP025490 |
| Coordinates | 157396..158112 (-) | Length | 238 a.a. |
| NCBI ID | WP_137373969.1 | Uniprot ID | - |
| Organism | Vibrio gallaecicus strain CECT 7244 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 152396..163112
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCU78_RS00670 | - | 152564..154756 (-) | 2193 | WP_240701752.1 | VWA domain-containing protein | - |
| OCU78_RS00675 | cysQ | 155049..155876 (-) | 828 | WP_137373966.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| OCU78_RS00680 | nudE | 155888..156457 (-) | 570 | WP_137373967.1 | ADP compounds hydrolase NudE | - |
| OCU78_RS00685 | nfuA | 156703..157287 (-) | 585 | WP_137373968.1 | Fe-S biogenesis protein NfuA | - |
| OCU78_RS00690 | comF | 157396..158112 (-) | 717 | WP_137373969.1 | ComF family protein | Machinery gene |
| OCU78_RS00695 | bioH | 158198..158983 (+) | 786 | WP_137373970.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| OCU78_RS00700 | - | 159307..159780 (+) | 474 | WP_137373971.1 | ATP-dependent Lon protease | - |
| OCU78_RS00705 | - | 159917..162250 (-) | 2334 | WP_137373972.1 | Tex family protein | - |
Sequence
Protein
Download Length: 238 a.a. Molecular weight: 27351.81 Da Isoelectric Point: 9.5998
>NTDB_id=92036 OCU78_RS00690 WP_137373969.1 157396..158112(-) (comF) [Vibrio gallaecicus strain CECT 7244]
MLSDWLQKNTQRLFTPLCPLCQLKKSDADSASIFCNTCMEFIASTTRCLRCGLETPSTIEQCGSCLSDPPLWDRLYCVSD
YTFPTSSYIHKFKYTKQFWLARDLASLISNRIDQPAPLITSVPLHWRRYLQRGFNQSDLLARYTAKTLTTKEMKIKSKTL
FKRIRATATQQGLSKRLRQQNLANAFTLIKTSLPKHIAIMDDVVTTGSTVNYLCQLLRERGVERIDIYCICRTPEPSK
MLSDWLQKNTQRLFTPLCPLCQLKKSDADSASIFCNTCMEFIASTTRCLRCGLETPSTIEQCGSCLSDPPLWDRLYCVSD
YTFPTSSYIHKFKYTKQFWLARDLASLISNRIDQPAPLITSVPLHWRRYLQRGFNQSDLLARYTAKTLTTKEMKIKSKTL
FKRIRATATQQGLSKRLRQQNLANAFTLIKTSLPKHIAIMDDVVTTGSTVNYLCQLLRERGVERIDIYCICRTPEPSK
Nucleotide
Download Length: 717 bp
>NTDB_id=92036 OCU78_RS00690 WP_137373969.1 157396..158112(-) (comF) [Vibrio gallaecicus strain CECT 7244]
ATGTTATCTGATTGGCTACAAAAGAACACCCAACGCCTGTTCACGCCTCTGTGCCCATTATGCCAACTAAAAAAGTCGGA
CGCAGATAGTGCTTCAATCTTTTGCAATACGTGTATGGAGTTTATTGCCTCAACGACTCGCTGCTTACGCTGTGGGTTAG
AAACACCTTCAACCATTGAGCAATGCGGCAGTTGCTTATCTGACCCTCCGCTATGGGACAGGCTATATTGTGTGAGTGAC
TATACCTTCCCTACGTCTTCTTATATTCATAAATTCAAATACACCAAACAGTTTTGGCTAGCTCGGGATTTAGCTTCACT
CATTTCAAACCGTATAGACCAACCCGCACCGCTGATCACAAGCGTCCCTTTGCATTGGCGACGCTATCTACAACGCGGAT
TTAATCAGAGCGATTTACTTGCCCGTTACACAGCGAAAACACTGACGACAAAAGAAATGAAAATTAAAAGCAAAACACTT
TTCAAACGAATAAGAGCGACGGCAACTCAGCAAGGCTTATCTAAGCGCCTTCGACAGCAGAACCTCGCCAATGCATTCAC
ACTAATAAAAACGTCATTACCTAAACACATTGCCATTATGGATGATGTGGTCACAACAGGCAGTACCGTGAACTATTTAT
GCCAGTTACTACGAGAAAGAGGGGTTGAAAGAATTGATATCTATTGTATTTGTCGGACGCCCGAGCCAAGTAAATAA
ATGTTATCTGATTGGCTACAAAAGAACACCCAACGCCTGTTCACGCCTCTGTGCCCATTATGCCAACTAAAAAAGTCGGA
CGCAGATAGTGCTTCAATCTTTTGCAATACGTGTATGGAGTTTATTGCCTCAACGACTCGCTGCTTACGCTGTGGGTTAG
AAACACCTTCAACCATTGAGCAATGCGGCAGTTGCTTATCTGACCCTCCGCTATGGGACAGGCTATATTGTGTGAGTGAC
TATACCTTCCCTACGTCTTCTTATATTCATAAATTCAAATACACCAAACAGTTTTGGCTAGCTCGGGATTTAGCTTCACT
CATTTCAAACCGTATAGACCAACCCGCACCGCTGATCACAAGCGTCCCTTTGCATTGGCGACGCTATCTACAACGCGGAT
TTAATCAGAGCGATTTACTTGCCCGTTACACAGCGAAAACACTGACGACAAAAGAAATGAAAATTAAAAGCAAAACACTT
TTCAAACGAATAAGAGCGACGGCAACTCAGCAAGGCTTATCTAAGCGCCTTCGACAGCAGAACCTCGCCAATGCATTCAC
ACTAATAAAAACGTCATTACCTAAACACATTGCCATTATGGATGATGTGGTCACAACAGGCAGTACCGTGAACTATTTAT
GCCAGTTACTACGAGAAAGAGGGGTTGAAAGAATTGATATCTATTGTATTTGTCGGACGCCCGAGCCAAGTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Vibrio cholerae strain A1552 |
52.966 |
99.16 |
0.525 |
| comF | Vibrio campbellii strain DS40M4 |
43.621 |
100 |
0.445 |