Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV50_RS23290 Genome accession   NZ_AP025487
Coordinates   137346..138068 (-) Length   240 a.a.
NCBI ID   WP_315974615.1    Uniprot ID   -
Organism   Vibrio fortis strain LMG 21557     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 132346..143068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV50_RS00590 - 132375..134810 (-) 2436 WP_261903416.1 cadherin-like domain-containing protein -
  OCV50_RS00595 cysQ 134982..135809 (-) 828 WP_152467963.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV50_RS00600 nudE 135820..136383 (-) 564 WP_239842221.1 ADP compounds hydrolase NudE -
  OCV50_RS00605 nfuA 136652..137236 (-) 585 WP_032551117.1 Fe-S biogenesis protein NfuA -
  OCV50_RS23290 comF 137346..138068 (-) 723 WP_315974615.1 ComF family protein Machinery gene
  OCV50_RS00615 bioH 138160..138936 (+) 777 WP_261903418.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV50_RS00620 - 139111..139584 (+) 474 WP_032551121.1 hypothetical protein -
  OCV50_RS00625 - 139759..142080 (-) 2322 WP_261903419.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27724.40 Da        Isoelectric Point: 9.4872

>NTDB_id=92030 OCV50_RS23290 WP_315974615.1 137346..138068(-) (comF) [Vibrio fortis strain LMG 21557]
MLSDWLQKHTPRLVTPQCHLCKLPKLPLDTHPKWCNSCLSHFSPQHRCQRCGIKLDINAIVCGECLKKPPPWQRLYCVGD
YDFPLSHYVHQMKYSGQFWLSRDLVKLLVAQIDHPAPIITSVPLHWQRYIHRGFNQSTYLANALAQELNCQSLTLFRRRR
ATPTQQGLSKTQRQRNLRNVFSLRNKEVMKVIAKGDVHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPAT

Nucleotide


Download         Length: 723 bp        

>NTDB_id=92030 OCV50_RS23290 WP_315974615.1 137346..138068(-) (comF) [Vibrio fortis strain LMG 21557]
ATGTTATCTGATTGGCTCCAAAAACACACACCACGCTTGGTCACACCACAATGCCATCTGTGCAAATTGCCAAAGTTACC
TTTAGATACTCATCCCAAATGGTGCAATAGCTGTCTCTCTCATTTCTCACCACAACACCGCTGCCAACGTTGTGGTATCA
AGCTCGATATTAATGCCATAGTATGTGGAGAATGCTTAAAAAAACCACCGCCTTGGCAAAGGCTGTATTGTGTCGGAGAC
TACGATTTTCCGCTCAGCCACTACGTCCATCAAATGAAATACAGTGGTCAATTCTGGTTGAGTCGGGATTTAGTCAAACT
CCTAGTAGCTCAAATCGACCACCCTGCTCCTATCATTACTAGCGTCCCATTACACTGGCAGCGCTACATTCATCGAGGTT
TTAATCAAAGCACCTACCTTGCCAATGCTCTAGCACAAGAGCTTAACTGCCAAAGCCTTACGCTATTTCGTCGCCGACGT
GCAACGCCAACTCAACAGGGGCTGAGTAAAACACAGCGCCAACGCAACCTACGCAATGTTTTCTCTTTAAGAAACAAGGA
AGTGATGAAAGTGATAGCAAAAGGCGACGTCCATGTTGCAATAATCGATGATGTTGTCACCACAGGCAGTACTGTGTATC
AATTATGTCAATTGCTGCTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAACCCGCGACT
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(137-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

54.772

100

0.55
  comF Vibrio campbellii strain DS40M4

49.194

100

0.508

Multiple sequence alignment