Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   VDS57_RS21175 Genome accession   NZ_CP141839
Coordinates   3957078..3957698 (+) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis strain PN1236     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3952078..3962698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS21135 (VDS57_21135) ptsA 3953209..3953715 (-) 507 WP_029726788.1 PTS sugar transporter subunit IIA -
  VDS57_RS21140 (VDS57_21140) ypqA 3953853..3954272 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  VDS57_RS21145 (VDS57_21145) sppG 3954293..3954670 (-) 378 WP_015251832.1 YppG family protein -
  VDS57_RS21150 (VDS57_21150) yppF 3954858..3955046 (+) 189 WP_003230690.1 YppF family protein -
  VDS57_RS21155 (VDS57_21155) yppE 3955085..3955456 (-) 372 WP_021481525.1 YppE family protein -
  VDS57_RS21160 (VDS57_21160) yppD 3955502..3955747 (-) 246 WP_021481526.1 DUF5446 family protein -
  VDS57_RS21165 (VDS57_21165) sspM 3955946..3956050 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  VDS57_RS21170 (VDS57_21170) yppC 3956075..3957037 (-) 963 WP_033881326.1 DUF2515 domain-containing protein -
  VDS57_RS21175 (VDS57_21175) recU 3957078..3957698 (+) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  VDS57_RS21180 (VDS57_21180) ponA 3957720..3960464 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  VDS57_RS21185 (VDS57_21185) ypoC 3960540..3961034 (-) 495 WP_009967579.1 YpoC family protein -
  VDS57_RS21190 (VDS57_21190) nth 3961031..3961690 (-) 660 WP_009967580.1 endonuclease III -
  VDS57_RS21195 (VDS57_21195) dnaD 3961709..3962407 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=920184 VDS57_RS21175 WP_014480105.1 3957078..3957698(+) (recU) [Bacillus subtilis strain PN1236]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=920184 VDS57_RS21175 WP_014480105.1 3957078..3957698(+) (recU) [Bacillus subtilis strain PN1236]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCACCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995