Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   VO178_RS18590 Genome accession   NZ_CP141829
Coordinates   3762400..3764832 (-) Length   810 a.a.
NCBI ID   WP_249659355.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain TZA38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3757400..3769832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO178_RS18580 (VO178_18580) corA 3759411..3760376 (-) 966 WP_036127283.1 magnesium/cobalt transporter CorA -
  VO178_RS18585 (VO178_18585) hpaB 3760843..3762276 (-) 1434 WP_249659356.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  VO178_RS18590 (VO178_18590) recD2 3762400..3764832 (-) 2433 WP_249659355.1 ATP-dependent RecD-like DNA helicase Machinery gene
  VO178_RS18595 (VO178_18595) hisA 3765021..3765788 (+) 768 WP_036119090.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  VO178_RS18600 (VO178_18600) - 3765785..3766072 (+) 288 WP_008181526.1 hypothetical protein -
  VO178_RS18605 (VO178_18605) - 3766349..3767080 (+) 732 WP_036149211.1 GTP pyrophosphokinase family protein -
  VO178_RS18610 (VO178_18610) - 3767155..3768597 (-) 1443 WP_036221271.1 MDR family MFS transporter -
  VO178_RS18615 (VO178_18615) - 3768788..3769447 (-) 660 WP_069482099.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90823.34 Da        Isoelectric Point: 5.0027

>NTDB_id=920036 VO178_RS18590 WP_249659355.1 3762400..3764832(-) (recD2) [Lysinibacillus fusiformis strain TZA38]
MTDHLDLFELNKFFILGRPIVSIFHNTQNMYSIIRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRLILEDPSALDAVPRLSSEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAIFHVLNTAA
LSDGHVYLDAEHVLPLVKEMLEQSQRQEIPFEDISKACIELREEGKICGEETRLYLPSLYFSEVGIASKILTLVERNSKA
EHFSKDEIRKAIGETEELLHVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPKDLTSKTTDRSFIKSSVDQIGNVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKKIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETVEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVKGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMDVDEVIVEVEAVPVKQEVVQEAAIEDPKLTVETAPYIHPMIGMD
DVSPYDFLEK

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=920036 VO178_RS18590 WP_249659355.1 3762400..3764832(-) (recD2) [Lysinibacillus fusiformis strain TZA38]
ATGACAGATCATCTCGATTTATTTGAACTCAATAAATTTTTTATTCTCGGACGTCCGATTGTCTCTATTTTTCATAACAC
ACAAAATATGTATTCCATTATACGAGTGAAAATTCAAGAGACAAACTTACAGTATGAAGATAAAGAAATTATTGTTGTTG
GCTATTTTCCACCGTTACAAATGGATGAGCAATACCGCTTTACAGGTATATTGAAACAGCATCCTAAATATGGTGCGCAA
TTCCAAATCGAGACATTTACAAAAGAGGTACCCGCTACTGAACAAGGAATTATTCATTATTTATCTAGTGACTTATTTGT
AGGAATCGGGAAAAAAACGGCTGAAACCATTGTTGAAAAACTAGGTGCTAATGCATTACGTCTTATTTTAGAAGATCCGA
GTGCACTGGATGCTGTTCCACGTTTATCATCTGAAAAAAAAGAAGTGATCCATCGCACGATTGAGCAAAATCTTGGTTTA
GAACGGGTAATGATCCAGCTAAATGAATGGGGCTTTGGTCCACAGCTTGGAATGAAAATATATCAAACCTATCGAACTGA
AGCCATTGAATTACTAACTGAAAACCCATATCGCTTAATAGAAGATGTGGAAGGGGTAGGGTTCTTTCGAGCAGATGAGC
TTGGTGCCAAATTAGGCATTACCGGAAAACATCCTGACCGTGTCAAAGCAGCGATTTTCCATGTTTTAAATACGGCTGCA
CTATCTGACGGGCATGTTTATCTAGACGCGGAGCATGTTCTACCACTTGTAAAGGAAATGCTTGAACAAAGCCAACGTCA
GGAAATTCCGTTTGAAGACATCTCAAAAGCATGTATCGAGCTACGAGAAGAAGGCAAAATTTGTGGGGAAGAAACAAGAT
TATATTTACCCTCTCTTTATTTTTCTGAGGTGGGAATTGCTTCTAAAATATTGACGCTTGTTGAACGAAATAGCAAGGCT
GAGCATTTTAGCAAAGATGAGATTCGTAAAGCGATTGGTGAAACTGAGGAACTACTCCATGTGACTTATGCTGAAACACA
AGCAAATGCCATTGAACAGGCTTTAAATTCAGCCGTAATGATTTTAACAGGTGGACCTGGTACGGGTAAAACGACTGTTG
TACGTGGGGTTGTTGAAGTTTATGCGAAGCTTCATGGCTTATCATTAAATCCAAAAGAATATGCTCAAAAAGAGGAGCCT
TTTCCTATTATCCTTTGTGCACCCACTGGACGAGCTGCGAAGCGCTTAGCTGAATCGACTGAACTACCAGCTATGACTAT
TCATCGTTTACTCGGCTTTACTGGTCAAGAAAAAGAAGAAGAGACTGAACGAGAGGTCACAGGAAAGCTTATTATTGTAG
ATGAAATGTCAATGGTGGATACGTGGCTTGCTCATCAATTATTAAAAGCTTTACATGAGGATGTACAGGTTGTCTTTGTA
GGGGACCAGGACCAACTACCGCCTGTAGGACCAGGACAGGTGTTGAAGGATTTATTAGCATCCAAGCAGCTTCCAACGGT
GGAATTGACAGATGTTTACCGACAAGCAGAGGGCTCTACAATTATTGAACTAGCCCATCAAATCAAAAAAGGAACCATTC
CGAAAGATTTAACATCGAAAACTACTGATCGCTCGTTTATTAAATCATCCGTCGATCAGATTGGAAATGTTGTGACACAG
GTAGTAAAAAGTGCTGTTGCTAAGGGGCAAGAAATTCGTAATATACAAGTATTAGCTCCGATGTATAAAGGTCCTGCTGG
CATTGATAATTTAAATAAAAAGATTCAAGAGCTTATTAATCCTAATGATACAGGGACAAGAAAGGAACTTGTCTTTGGGG
ACGTAACATATCGAATAAAGGATAAAGTTCTGCAGCTCGTCAATCAGCCTGAAAGTAATGTTTTTAATGGTGATATGGGA
GAAGTCATTAGTATTATTAAGGCAAAAGAGACAGTAGAAAAACAAGATTTACTGATTGTCTCCTTTGATGGCATTGAAGT
GACCTATCAACGAAGTGACCTCAATCAATTGACACTAGCTTATTGTTGCTCCATTCATAAATCTCAAGGTTCAGAGTTTC
AAACCGTCATTATGCCTGTTGTCAAAGGGTATTCTAAAATGCTGCGGCGTAATCTTTTGTACACAGGTATTACAAGAGCG
AAAAACTTTTTGATTTTATGTGGGGAACCCGATGTCCTGGCAGATGGTTTGCAGCGTACAGACGATTTACAGCGTTTTAC
TTCGTTGCGCGCTCGATTAAATCCAATGGATGTCGACGAAGTCATTGTTGAAGTCGAGGCAGTTCCAGTAAAACAAGAGG
TTGTGCAAGAAGCGGCTATCGAGGACCCTAAATTAACAGTAGAAACAGCTCCTTATATTCATCCAATGATTGGTATGGAT
GATGTCTCCCCCTATGATTTTTTGGAAAAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(343-549)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.147

100

0.525