Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VO177_RS17060 Genome accession   NZ_CP141828
Coordinates   3389828..3390607 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain TZS01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3384828..3395607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO177_RS17030 (VO177_17030) fliH 3384872..3385627 (-) 756 WP_017417778.1 flagellar assembly protein FliH -
  VO177_RS17035 (VO177_17035) fliG 3385620..3386636 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  VO177_RS17040 (VO177_17040) fliF 3386649..3388259 (-) 1611 WP_031303988.1 flagellar basal-body MS-ring/collar protein FliF -
  VO177_RS17045 (VO177_17045) fliE 3388302..3388622 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  VO177_RS17050 (VO177_17050) flgC 3388633..3389085 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  VO177_RS17055 (VO177_17055) flgB 3389085..3389474 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  VO177_RS17060 (VO177_17060) codY 3389828..3390607 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VO177_RS17065 (VO177_17065) hslU 3390645..3392048 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  VO177_RS17070 (VO177_17070) hslV 3392065..3392610 (-) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  VO177_RS17075 (VO177_17075) xerC 3392626..3393543 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  VO177_RS17080 (VO177_17080) trmFO 3393613..3394920 (-) 1308 WP_021493689.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=919985 VO177_RS17060 WP_003154263.1 3389828..3390607(-) (codY) [Bacillus velezensis strain TZS01]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=919985 VO177_RS17060 WP_003154263.1 3389828..3390607(-) (codY) [Bacillus velezensis strain TZS01]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATCCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471