Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB3G53_RS17665 Genome accession   NZ_CP161999
Coordinates   3753548..3754813 (-) Length   421 a.a.
NCBI ID   WP_057093109.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SIMBA061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3748548..3759813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G53_RS17635 (AB3G53_17635) pncA 3748774..3749418 (-) 645 WP_057093114.1 bifunctional nicotinamidase/pyrazinamidase -
  AB3G53_RS17640 (AB3G53_17640) dapA 3749748..3750641 (+) 894 WP_057093111.1 4-hydroxy-tetrahydrodipicolinate synthase -
  AB3G53_RS17645 (AB3G53_17645) - 3750657..3751259 (+) 603 WP_001177091.1 hypothetical protein -
  AB3G53_RS17650 (AB3G53_17650) purC 3751296..3752015 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  AB3G53_RS17655 (AB3G53_17655) - 3752208..3752411 (+) 204 WP_000418560.1 hypothetical protein -
  AB3G53_RS17660 (AB3G53_17660) - 3752693..3753532 (+) 840 WP_002046338.1 formate/nitrite transporter family protein -
  AB3G53_RS17665 (AB3G53_17665) rarA 3753548..3754813 (-) 1266 WP_057093109.1 replication-associated recombination protein A Machinery gene
  AB3G53_RS17670 (AB3G53_17670) - 3754919..3756091 (-) 1173 WP_057093107.1 PQQ-dependent sugar dehydrogenase -
  AB3G53_RS17675 (AB3G53_17675) - 3756201..3756659 (-) 459 WP_057093105.1 YcgN family cysteine cluster protein -
  AB3G53_RS17680 (AB3G53_17680) - 3756854..3757012 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  AB3G53_RS17685 (AB3G53_17685) - 3757184..3757921 (+) 738 WP_057093103.1 dienelactone hydrolase family protein -
  AB3G53_RS17690 (AB3G53_17690) - 3758107..3758469 (+) 363 WP_000130110.1 HIT family protein -
  AB3G53_RS17695 (AB3G53_17695) mutY 3758610..3759644 (+) 1035 WP_057093101.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46904.55 Da        Isoelectric Point: 5.8354

>NTDB_id=919964 AB3G53_RS17665 WP_057093109.1 3753548..3754813(-) (rarA) [Acinetobacter baumannii strain SIMBA061]
MSDSHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGVNYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=919964 AB3G53_RS17665 WP_057093109.1 3753548..3754813(-) (rarA) [Acinetobacter baumannii strain SIMBA061]
ATGTCAGACTCCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGTGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTAAATTTACTAGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGATATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTGGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAGTTAATTATCTTT
ATCCTCATGACTACCCTGAGCACTTTGTATTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.5

95.012

0.385