Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VO179_RS01645 Genome accession   NZ_CP141827
Coordinates   368337..369116 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain XHA14     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 363337..374116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO179_RS01625 (VO179_01625) trmFO 364024..365331 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VO179_RS01630 (VO179_01630) xerC 365401..366318 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  VO179_RS01635 (VO179_01635) hslV 366334..366879 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  VO179_RS01640 (VO179_01640) hslU 366896..368299 (+) 1404 WP_324675038.1 HslU--HslV peptidase ATPase subunit -
  VO179_RS01645 (VO179_01645) codY 368337..369116 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VO179_RS01650 (VO179_01650) flgB 369470..369859 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  VO179_RS01655 (VO179_01655) flgC 369859..370311 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  VO179_RS01660 (VO179_01660) fliE 370322..370642 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  VO179_RS01665 (VO179_01665) fliF 370685..372295 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  VO179_RS01670 (VO179_01670) fliG 372308..373324 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  VO179_RS01675 (VO179_01675) fliH 373317..374072 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=919862 VO179_RS01645 WP_003154263.1 368337..369116(+) (codY) [Bacillus velezensis strain XHA14]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=919862 VO179_RS01645 WP_003154263.1 368337..369116(+) (codY) [Bacillus velezensis strain XHA14]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471