Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VO180_RS11430 Genome accession   NZ_CP141826
Coordinates   2369251..2370030 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain XHA16     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2364251..2375030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS11400 (VO180_11400) fliH 2364295..2365050 (-) 756 WP_015239852.1 flagellar assembly protein FliH -
  VO180_RS11405 (VO180_11405) fliG 2365043..2366059 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  VO180_RS11410 (VO180_11410) fliF 2366072..2367682 (-) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  VO180_RS11415 (VO180_11415) fliE 2367725..2368045 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  VO180_RS11420 (VO180_11420) flgC 2368056..2368508 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  VO180_RS11425 (VO180_11425) flgB 2368508..2368897 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  VO180_RS11430 (VO180_11430) codY 2369251..2370030 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VO180_RS11435 (VO180_11435) hslU 2370068..2371471 (-) 1404 WP_324675038.1 HslU--HslV peptidase ATPase subunit -
  VO180_RS11440 (VO180_11440) hslV 2371488..2372033 (-) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  VO180_RS11445 (VO180_11445) xerC 2372049..2372966 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  VO180_RS11450 (VO180_11450) trmFO 2373036..2374343 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=919825 VO180_RS11430 WP_003154263.1 2369251..2370030(-) (codY) [Bacillus velezensis strain XHA16]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=919825 VO180_RS11430 WP_003154263.1 2369251..2370030(-) (codY) [Bacillus velezensis strain XHA16]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471