Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV36_RS15575 Genome accession   NZ_AP025483
Coordinates   3431317..3432030 (+) Length   237 a.a.
NCBI ID   WP_210114714.1    Uniprot ID   -
Organism   Vibrio echinoideorum strain DSM 107264     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3426317..3437030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV36_RS15560 - 3427299..3429629 (+) 2331 WP_135455787.1 Tex family protein -
  OCV36_RS15565 - 3429800..3430273 (-) 474 WP_004735616.1 hypothetical protein -
  OCV36_RS15570 bioH 3430447..3431223 (-) 777 WP_135455789.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV36_RS15575 comF 3431317..3432030 (+) 714 WP_210114714.1 ComF family protein Machinery gene
  OCV36_RS15580 nfuA 3432140..3432724 (+) 585 WP_004735612.1 Fe-S biogenesis protein NfuA -
  OCV36_RS15585 nudE 3433098..3433649 (+) 552 WP_017079321.1 ADP compounds hydrolase NudE -
  OCV36_RS15590 cysQ 3433686..3434513 (+) 828 WP_017076153.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV36_RS15595 - 3434648..3435427 (-) 780 WP_135455792.1 type II secretion system protein N -
  OCV36_RS15600 - 3435429..3435917 (-) 489 WP_017076155.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27292.61 Da        Isoelectric Point: 9.0238

>NTDB_id=91980 OCV36_RS15575 WP_210114714.1 3431317..3432030(+) (comF) [Vibrio echinoideorum strain DSM 107264]
MLSDWLQKHTPRLVTPQCHLCKLDKSHSDVHPRWCDSCLNLFESVPRCQRCGLKTLTIVEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLASRIEHPAPLITSVPLHWRRYIHRGFNQSQLLANYTAQELGVKDEVLFRRIR
STASQQGLTKPARLHNLKSAFTLRKQDFQGTVPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=91980 OCV36_RS15575 WP_210114714.1 3431317..3432030(+) (comF) [Vibrio echinoideorum strain DSM 107264]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACTTATGCAAGCTAGATAAGTCGCA
CAGCGATGTTCACCCTCGATGGTGTGATTCTTGTCTTAATCTCTTTGAGTCAGTTCCTCGCTGCCAACGATGTGGCTTGA
AAACACTGACGATCGTCGAACAGTGTGGTCAATGCTTGTCTCAACCTCCTCCTTGGCATCGTCTCTATTGTGTCGGCGAC
TACACCTTCCCAACGGCACGTTATATCCAACAGATGAAATACGCCGATAAGTTCTGGTTTGCTCGTGATCTATCAAAGTT
ATTGGCTTCACGTATCGAGCATCCTGCTCCGCTGATCACCAGCGTACCTCTGCATTGGCGTCGATATATTCATCGAGGCT
TTAATCAAAGTCAGCTGCTCGCTAATTACACAGCTCAAGAACTTGGCGTTAAAGATGAGGTGCTGTTCCGGCGAATTCGC
TCAACCGCTTCTCAGCAAGGGCTGACTAAACCCGCACGCTTACATAATCTAAAGAGCGCTTTTACGCTTCGAAAACAAGA
CTTTCAAGGAACTGTCCCTTCTCACGTCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.78

99.578

0.565
  comF Vibrio campbellii strain DS40M4

50

100

0.515

Multiple sequence alignment