Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   VF946_RS07370 Genome accession   NZ_CP141824
Coordinates   1421571..1422287 (-) Length   238 a.a.
NCBI ID   WP_329894432.1    Uniprot ID   -
Organism   Streptococcus suis strain HB18     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1416571..1427287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS07355 uidA 1416932..1418731 (-) 1800 WP_074389631.1 beta-glucuronidase -
  VF946_RS07360 - 1418747..1419775 (-) 1029 WP_074389065.1 sugar kinase -
  VF946_RS07365 - 1419831..1421384 (-) 1554 WP_024405786.1 MFS transporter -
  VF946_RS07370 endA 1421571..1422287 (-) 717 WP_329894432.1 DNA/RNA non-specific endonuclease Machinery gene
  VF946_RS07375 - 1422317..1422508 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  VF946_RS07380 murA 1422501..1423784 (-) 1284 WP_074389630.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  VF946_RS07385 - 1423808..1424032 (-) 225 WP_012775178.1 DUF1146 family protein -
  VF946_RS07390 - 1424092..1424508 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  VF946_RS07395 atpD 1424518..1425924 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  VF946_RS07400 - 1425944..1426822 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25885.63 Da        Isoelectric Point: 7.0734

>NTDB_id=919759 VF946_RS07370 WP_329894432.1 1421571..1422287(-) (endA) [Streptococcus suis strain HB18]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPNQELASSDNKTKTVQGETVPTVANAL
LAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHAVDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQ
TSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPVGSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 717 bp        

>NTDB_id=919759 VF946_RS07370 WP_329894432.1 1421571..1422287(-) (endA) [Streptococcus suis strain HB18]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGTAGCAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAATCAGGAACTGGCTAGTTCGGATAATAAGACAAAAACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTT
TTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAGAAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCA
TCAGATCCATGATTTAACTGGAGAATATGACCATGCAGTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGAT
TGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAATATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAA
ACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTCGGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGAC
CTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTCGGAAGTCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGT
TCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAGTATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(71-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

74.157

74.79

0.555
  endA Streptococcus pneumoniae D39

74.157

74.79

0.555
  endA Streptococcus pneumoniae R6

74.157

74.79

0.555
  endA Streptococcus pneumoniae TIGR4

74.157

74.79

0.555