Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB3G51_RS00275 Genome accession   NZ_CP161992
Coordinates   60756..62021 (+) Length   421 a.a.
NCBI ID   WP_046127398.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SIMBA034     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55756..67021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G51_RS00245 (AB3G51_00245) mutY 55923..56957 (-) 1035 WP_001113863.1 A/G-specific adenine glycosylase -
  AB3G51_RS00250 (AB3G51_00250) - 57098..57460 (-) 363 WP_000130110.1 HIT family protein -
  AB3G51_RS00255 (AB3G51_00255) - 57648..58385 (-) 738 WP_046127400.1 dienelactone hydrolase family protein -
  AB3G51_RS00260 (AB3G51_00260) - 58557..58715 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  AB3G51_RS00265 (AB3G51_00265) - 58910..59368 (+) 459 WP_005127813.1 YcgN family cysteine cluster protein -
  AB3G51_RS00270 (AB3G51_00270) - 59478..60650 (+) 1173 WP_046127399.1 PQQ-dependent sugar dehydrogenase -
  AB3G51_RS00275 (AB3G51_00275) rarA 60756..62021 (+) 1266 WP_046127398.1 replication-associated recombination protein A Machinery gene
  AB3G51_RS00280 (AB3G51_00280) - 62036..62875 (-) 840 WP_000349488.1 formate/nitrite transporter family protein -
  AB3G51_RS00285 (AB3G51_00285) - 63161..63364 (-) 204 WP_000418560.1 hypothetical protein -
  AB3G51_RS00290 (AB3G51_00290) purC 63556..64275 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  AB3G51_RS00295 (AB3G51_00295) - 64314..64916 (-) 603 WP_001177091.1 hypothetical protein -
  AB3G51_RS00300 (AB3G51_00300) dapA 64932..65825 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  AB3G51_RS00305 (AB3G51_00305) pncA 66155..66799 (+) 645 WP_001985076.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46918.58 Da        Isoelectric Point: 5.8354

>NTDB_id=919735 AB3G51_RS00275 WP_046127398.1 60756..62021(+) (rarA) [Acinetobacter baumannii strain SIMBA034]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGVNYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=919735 AB3G51_RS00275 WP_046127398.1 60756..62021(+) (rarA) [Acinetobacter baumannii strain SIMBA034]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGACATTTGCCCTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCAT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATTAAATCGATTCGTGGTAGTGATCCGGATGCAGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAGTTAATTATCTTT
ATCCTCATGACTACCCTGAGCACTTTGTATTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.5

95.012

0.385