Detailed information NTG0919552

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AB2M34_RS16635
• Genome accession: NZ_CP161903
• Coordinates: 3085113..3086285 (-)
• Length: 390 a.a.
• NCBI ID: WP_129134239.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain DYJ24
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3080113..3091285

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB2M34_RS16615 (AB2M34_16615)	yhcQ	3081996..3082649 (+)	654	WP_009966881.1	spore coat protein	-
AB2M34_RS16620 (AB2M34_16620)	-	3082581..3083549 (-)	969	WP_124048247.1	hypothetical protein	-
AB2M34_RS16625 (AB2M34_16625)	yhcN	3083670..3084245 (-)	576	WP_038829230.1	YhcN/YlaJ family sporulation lipoprotein	-
AB2M34_RS16630 (AB2M34_16630)	-	3084395..3084841 (+)	447	WP_014479275.1	hypothetical protein	-
AB2M34_RS16635 (AB2M34_16635)	rapF	3085113..3086285 (-)	1173	WP_129134239.1	Rap family tetratricopeptide repeat protein	Regulator
AB2M34_RS16640 (AB2M34_16640)	-	3086659..3087387 (-)	729	WP_087614473.1	DUF4145 domain-containing protein	-
AB2M34_RS16645 (AB2M34_16645)	-	3087696..3088106 (-)	411	WP_087614472.1	hypothetical protein	-
AB2M34_RS16650 (AB2M34_16650)	-	3088150..3088914 (-)	765	WP_087614471.1	hypothetical protein	-
AB2M34_RS16655 (AB2M34_16655)	-	3089226..3089609 (-)	384	WP_087614470.1	cystatin-like fold lipoprotein	-
AB2M34_RS16660 (AB2M34_16660)	-	3089672..3090178 (-)	507	WP_129134237.1	hypothetical protein	-
AB2M34_RS16665 (AB2M34_16665)	cwlT	3090193..3091182 (-)	990	WP_033881969.1	bifunctional lytic transglycosylase/C40 family peptidase	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 46209.74 Da
• Isoelectric Point: 6.0438

>NTDB_id=919552 AB2M34_RS16635 WP_129134239.1 3085113..3086285(-) (rapF) [Bacillus subtilis strain DYJ24]
MRGVLDKDKIPYDVVTKKLNEWYTHIKNDDLEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLREVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
NASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGVYFQKGHEFVKKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMLSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide

• Length: 1173 bp

>NTDB_id=919552 AB2M34_RS16635 WP_129134239.1 3085113..3086285(-) (rapF) [Bacillus subtilis strain DYJ24]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACAAAAAAATTAAACGAATGGTACACCCATATAAA
AAATGATGATCTTGAAAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTGCTTGAATTCCGCCACGAATTGTTGGTCAATTACATGAATTCAGAAAAGACAGAAGAGTTG
AAAAGTTCATATCTAGCTATGAAAAAATTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGAG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTATTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATTGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGATTACAAA
AATGCATCAAGTCATCTAAAAAAGGCGTTGGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGTCTATTTTCAAAAAGGACATGAGTTCGTAAAAA
AAACAAATGACGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCGCAATTTTT
TCACCGAAAACAGGATTTTCAACGCTCAAGTGAATATTATATGTTGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (198-254)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (9-69)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	38.095	96.923	0.369