Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   AB2M34_RS15520 Genome accession   NZ_CP161903
Coordinates   2861321..2862238 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain DYJ24     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2856321..2867238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS15495 (AB2M34_15495) spx 2856678..2857073 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  AB2M34_RS15500 (AB2M34_15500) yjbC 2857254..2857832 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  AB2M34_RS15505 (AB2M34_15505) yjbB 2857996..2859213 (-) 1218 WP_095010820.1 MFS transporter -
  AB2M34_RS15510 (AB2M34_15510) oppF 2859321..2860238 (-) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  AB2M34_RS15515 (AB2M34_15515) oppD 2860240..2861316 (-) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  AB2M34_RS15520 (AB2M34_15520) amiD 2861321..2862238 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  AB2M34_RS15525 (AB2M34_15525) oppB 2862242..2863177 (-) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  AB2M34_RS15530 (AB2M34_15530) oppA 2863285..2864922 (-) 1638 WP_014479443.1 oligopeptide ABC transporter substrate-binding protein OppA -
  AB2M34_RS15535 (AB2M34_15535) trpS 2865666..2866658 (+) 993 WP_015483084.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=919537 AB2M34_RS15520 WP_003232954.1 2861321..2862238(-) (amiD) [Bacillus subtilis strain DYJ24]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=919537 AB2M34_RS15520 WP_003232954.1 2861321..2862238(-) (amiD) [Bacillus subtilis strain DYJ24]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATTATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364