Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   VA243_RS06655 Genome accession   NZ_CP141774
Coordinates   1370508..1370771 (+) Length   87 a.a.
NCBI ID   WP_000584955.1    Uniprot ID   K7YLH7
Organism   Helicobacter pylori strain P07353     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1365508..1375771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA243_RS06630 groES 1365807..1366163 (-) 357 WP_000671954.1 co-chaperone GroES -
  VA243_RS06635 dnaG 1366436..1368115 (+) 1680 WP_324714579.1 DNA primase -
  VA243_RS06640 - 1368112..1369164 (+) 1053 WP_324714580.1 MnmA/TRMU family protein -
  VA243_RS06645 - 1369255..1370082 (+) 828 WP_324714581.1 DUF5718 family protein -
  VA243_RS06650 comB2 1370227..1370508 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  VA243_RS06655 comB3 1370508..1370771 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  VA243_RS06660 comB4 1370773..1373136 (+) 2364 WP_324714582.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  VA243_RS06670 - 1373494..1374834 (+) 1341 WP_324714583.1 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10048.12 Da        Isoelectric Point: 9.5507

>NTDB_id=919413 VA243_RS06655 WP_000584955.1 1370508..1370771(+) (comB3) [Helicobacter pylori strain P07353]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=919413 VA243_RS06655 WP_000584955.1 1370508..1370771(+) (comB3) [Helicobacter pylori strain P07353]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K7YLH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977