Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   VA210_RS05865 Genome accession   NZ_CP141773
Coordinates   1209826..1210089 (-) Length   87 a.a.
NCBI ID   WP_000584955.1    Uniprot ID   K7YLH7
Organism   Helicobacter pylori strain P08205     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1204826..1215089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA210_RS05850 - 1205800..1207230 (-) 1431 WP_180410747.1 COG3014 family protein -
  VA210_RS05860 comB4 1207461..1209824 (-) 2364 WP_324713501.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  VA210_RS05865 comB3 1209826..1210089 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  VA210_RS05870 comB2 1210089..1210370 (-) 282 WP_033756641.1 TrbC/VirB2 family protein Machinery gene
  VA210_RS05875 - 1210516..1211343 (-) 828 WP_180593362.1 DUF5718 family protein -
  VA210_RS05880 - 1211433..1212485 (-) 1053 WP_324713502.1 MnmA/TRMU family protein -
  VA210_RS05885 dnaG 1212482..1214161 (-) 1680 WP_324713503.1 DNA primase -
  VA210_RS05890 groES 1214436..1214792 (+) 357 WP_324713504.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10048.12 Da        Isoelectric Point: 9.5507

>NTDB_id=919393 VA210_RS05865 WP_000584955.1 1209826..1210089(-) (comB3) [Helicobacter pylori strain P08205]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=919393 VA210_RS05865 WP_000584955.1 1209826..1210089(-) (comB3) [Helicobacter pylori strain P08205]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K7YLH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977