Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   VA211_RS02455 Genome accession   NZ_CP141771
Coordinates   490134..490418 (-) Length   94 a.a.
NCBI ID   WP_324685915.1    Uniprot ID   -
Organism   Helicobacter pylori strain P08204     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 485134..495418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA211_RS02430 - 485954..486607 (+) 654 WP_324686360.1 IS607-like element IS607 family transposase -
  VA211_RS02435 - 486582..487841 (+) 1260 WP_180399382.1 RNA-guided endonuclease InsQ/TnpB family protein -
  VA211_RS02440 - 487867..489625 (-) 1759 Protein_468 FtsK/SpoIIIE domain-containing protein -
  VA211_RS02445 - 489606..489848 (-) 243 WP_324685911.1 hypothetical protein -
  VA211_RS02450 comB3 489860..490123 (-) 264 WP_324685913.1 competence protein ComB Machinery gene
  VA211_RS02455 comB2 490134..490418 (-) 285 WP_324685915.1 TrbC/VirB2 family protein Machinery gene
  VA211_RS02460 - 490415..490894 (-) 480 WP_324685917.1 hypothetical protein -
  VA211_RS02465 - 490998..491785 (-) 788 Protein_473 integrase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10694.07 Da        Isoelectric Point: 11.4620

>NTDB_id=919364 VA211_RS02455 WP_324685915.1 490134..490418(-) (comB2) [Helicobacter pylori strain P08204]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLGRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=919364 VA211_RS02455 WP_324685915.1 490134..490418(-) (comB2) [Helicobacter pylori strain P08204]
ATGAAAAAATTAAGGCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGGCAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

56.667

95.745

0.543