Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | OCW38_RS14325 | Genome accession | NZ_AP025480 |
| Coordinates | 3262383..3263096 (+) | Length | 237 a.a. |
| NCBI ID | WP_315974536.1 | Uniprot ID | - |
| Organism | Vibrio cyclitrophicus strain LMG 21359 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3257383..3268096
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCW38_RS14310 | - | 3258229..3260559 (+) | 2331 | WP_261894634.1 | Tex family protein | - |
| OCW38_RS14315 | - | 3260684..3261157 (-) | 474 | WP_010433611.1 | hypothetical protein | - |
| OCW38_RS14320 | bioH | 3261513..3262289 (-) | 777 | WP_261894637.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| OCW38_RS14325 | comF | 3262383..3263096 (+) | 714 | WP_315974536.1 | ComF family protein | Machinery gene |
| OCW38_RS14330 | nfuA | 3263206..3263790 (+) | 585 | WP_010433605.1 | Fe-S biogenesis protein NfuA | - |
| OCW38_RS14335 | nudE | 3264073..3264621 (+) | 549 | WP_261894642.1 | ADP compounds hydrolase NudE | - |
| OCW38_RS14340 | cysQ | 3264658..3265485 (+) | 828 | WP_261894644.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| OCW38_RS14345 | - | 3265772..3267967 (+) | 2196 | WP_261894646.1 | VWA domain-containing protein | - |
Sequence
Protein
Download Length: 237 a.a. Molecular weight: 27219.23 Da Isoelectric Point: 8.4339
>NTDB_id=91936 OCW38_RS14325 WP_315974536.1 3262383..3263096(+) (comF) [Vibrio cyclitrophicus strain LMG 21359]
MLSDWLQKNTPRLVTSQCHLCKLDKLPNDTHPRWCQSCLDLFCQQPRCQRCGLKTLLTVEQCGQCLSQPPPWHHLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLAPHIQHPAPLITGVPLHWTRYLHRGFNQSQLLAHYTAQELNVKSAVLFRRTR
STASQQGLTKSARQNNLEDAFTLRNTNFSTNDDSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG
MLSDWLQKNTPRLVTSQCHLCKLDKLPNDTHPRWCQSCLDLFCQQPRCQRCGLKTLLTVEQCGQCLSQPPPWHHLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLAPHIQHPAPLITGVPLHWTRYLHRGFNQSQLLAHYTAQELNVKSAVLFRRTR
STASQQGLTKSARQNNLEDAFTLRNTNFSTNDDSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG
Nucleotide
Download Length: 714 bp
>NTDB_id=91936 OCW38_RS14325 WP_315974536.1 3262383..3263096(+) (comF) [Vibrio cyclitrophicus strain LMG 21359]
ATGTTATCTGATTGGCTACAAAAAAACACACCACGCCTGGTCACATCTCAGTGCCACCTATGCAAGCTAGACAAACTCCC
CAATGATACTCATCCTCGATGGTGTCAGTCTTGCCTCGATCTCTTTTGCCAACAGCCACGCTGCCAACGATGTGGGTTAA
AAACACTGCTCACAGTCGAGCAGTGTGGTCAATGCTTGTCTCAGCCTCCACCTTGGCATCATCTCTATTGTGTAGGTGAC
TACACCTTTCCAACGGCGCGTTATATCCAACAAATGAAATACGCCGATAAGTTCTGGTTCGCTCGCGATCTATCAAAATT
GTTAGCGCCACATATTCAGCACCCAGCGCCTTTGATTACCGGTGTTCCCTTACATTGGACTCGATACCTTCATCGAGGTT
TTAACCAAAGCCAGTTATTGGCACATTACACAGCTCAGGAGCTGAATGTTAAAAGTGCGGTTTTATTTCGTCGAACTCGA
TCAACCGCTTCGCAGCAAGGGTTAACCAAATCAGCAAGGCAGAACAACCTGGAAGACGCTTTCACGCTGCGCAATACGAA
TTTTTCAACGAACGATGACTCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA
ATGTTATCTGATTGGCTACAAAAAAACACACCACGCCTGGTCACATCTCAGTGCCACCTATGCAAGCTAGACAAACTCCC
CAATGATACTCATCCTCGATGGTGTCAGTCTTGCCTCGATCTCTTTTGCCAACAGCCACGCTGCCAACGATGTGGGTTAA
AAACACTGCTCACAGTCGAGCAGTGTGGTCAATGCTTGTCTCAGCCTCCACCTTGGCATCATCTCTATTGTGTAGGTGAC
TACACCTTTCCAACGGCGCGTTATATCCAACAAATGAAATACGCCGATAAGTTCTGGTTCGCTCGCGATCTATCAAAATT
GTTAGCGCCACATATTCAGCACCCAGCGCCTTTGATTACCGGTGTTCCCTTACATTGGACTCGATACCTTCATCGAGGTT
TTAACCAAAGCCAGTTATTGGCACATTACACAGCTCAGGAGCTGAATGTTAAAAGTGCGGTTTTATTTCGTCGAACTCGA
TCAACCGCTTCGCAGCAAGGGTTAACCAAATCAGCAAGGCAGAACAACCTGGAAGACGCTTTCACGCTGCGCAATACGAA
TTTTTCAACGAACGATGACTCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Vibrio cholerae strain A1552 |
54.661 |
99.578 |
0.544 |
| comF | Vibrio campbellii strain DS40M4 |
49.18 |
100 |
0.506 |