Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   AB2M35_RS08660 Genome accession   NZ_CP161902
Coordinates   1657632..1658081 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain DYJ22     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1652632..1663081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS08620 (AB2M35_08620) ctaE 1652649..1653272 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  AB2M35_RS08625 (AB2M35_08625) ctaF 1653275..1653607 (+) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  AB2M35_RS08630 (AB2M35_08630) ctaG 1653635..1654528 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  AB2M35_RS08635 (AB2M35_08635) ylbA 1654560..1654922 (-) 363 WP_003232238.1 YugN family protein -
  AB2M35_RS08640 (AB2M35_08640) ylbB 1655062..1655508 (+) 447 WP_046160383.1 CBS domain-containing protein -
  AB2M35_RS08645 (AB2M35_08645) ylbC 1655592..1656632 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  AB2M35_RS08650 (AB2M35_08650) ylbD 1656863..1657261 (+) 399 WP_046160384.1 YlbD family protein -
  AB2M35_RS08655 (AB2M35_08655) ylbE 1657277..1657516 (+) 240 WP_003232231.1 YlbE-like family protein -
  AB2M35_RS08660 (AB2M35_08660) ylbF 1657632..1658081 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AB2M35_RS08665 (AB2M35_08665) ylbG 1658136..1658408 (+) 273 WP_009967171.1 YlbG family protein -
  AB2M35_RS08670 (AB2M35_08670) rsmD 1658731..1659285 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB2M35_RS08675 (AB2M35_08675) coaD 1659290..1659775 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AB2M35_RS08680 (AB2M35_08680) spoVV 1659786..1661012 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  AB2M35_RS08685 (AB2M35_08685) ylbK 1661193..1661975 (+) 783 WP_003232221.1 patatin family protein -
  AB2M35_RS08690 (AB2M35_08690) sepM 1661977..1663002 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=919346 AB2M35_RS08660 WP_003221370.1 1657632..1658081(+) (ylbF) [Bacillus subtilis strain DYJ22]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=919346 AB2M35_RS08660 WP_003221370.1 1657632..1658081(+) (ylbF) [Bacillus subtilis strain DYJ22]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1