Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VNN51_RS03345 Genome accession   NZ_CP141727
Coordinates   683633..684424 (-) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M20011502 FF20a2     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 678633..689424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN51_RS03325 (VNN51_03325) - 678904..680259 (+) 1356 WP_253008310.1 MATE family efflux transporter -
  VNN51_RS03330 (VNN51_03330) gatB 680274..681707 (-) 1434 WP_017368697.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  VNN51_RS03335 (VNN51_03335) gatA 681709..683181 (-) 1473 WP_253008311.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  VNN51_RS03340 (VNN51_03340) gatC 683181..683486 (-) 306 WP_213432757.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  VNN51_RS03345 (VNN51_03345) codY 683633..684424 (-) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VNN51_RS03350 (VNN51_03350) - 684561..686168 (-) 1608 WP_213495866.1 glycosyltransferase -
  VNN51_RS03355 (VNN51_03355) - 686308..686631 (-) 324 WP_003133632.1 DUF1292 domain-containing protein -
  VNN51_RS03360 (VNN51_03360) ruvX 686646..687074 (-) 429 WP_017368693.1 Holliday junction resolvase RuvX -
  VNN51_RS03365 (VNN51_03365) - 687074..687340 (-) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  VNN51_RS03370 (VNN51_03370) - 687519..688430 (-) 912 WP_017368692.1 aldo/keto reductase -
  VNN51_RS03375 (VNN51_03375) rpmH 688579..688713 (-) 135 WP_003135255.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=919035 VNN51_RS03345 WP_003133634.1 683633..684424(-) (codY) [Lactococcus formosensis strain M20011502 FF20a2]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=919035 VNN51_RS03345 WP_003133634.1 683633..684424(-) (codY) [Lactococcus formosensis strain M20011502 FF20a2]
GTGGCTACTTTACTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTTATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAGCTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACAATTAACGAGCCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGTTTGGGAACCTTCATCTTAT
GGCGTACAGACGGAAAATTCAGTGATGATGATCTTGTGCTTGCAGAGCTTGCAACAACAGTTATCGGTGTTCAACTTTCA
AATCTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGACACAATGGCTAACATGGCAGTCAATACACTTTCGTATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACATGTTATTGCTTCAGTCATTGCCGACA
AGATTGGAATTACACGTTCAGTAATCGTTAATGCACTACGTAAGCTTGAATCTGCTGGTGTTATTGAAAGCCGTTCGTTG
GGAATGAAAGGGACTTACCTCAAAGTTCTTAACCAAGGTTTATTTACAAAGCTTGAAGGTCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483