Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VNN48_RS07240 Genome accession   NZ_CP141723
Coordinates   1483823..1484614 (+) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus formosensis strain PAQ-208     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1478823..1489614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN48_RS07210 (VNN48_07205) rpmH 1479534..1479668 (+) 135 WP_003135255.1 50S ribosomal protein L34 -
  VNN48_RS07215 (VNN48_07210) - 1479817..1480728 (+) 912 WP_017368692.1 aldo/keto reductase family oxidoreductase -
  VNN48_RS07220 (VNN48_07215) - 1480907..1481173 (+) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  VNN48_RS07225 (VNN48_07220) ruvX 1481173..1481601 (+) 429 WP_017368693.1 Holliday junction resolvase RuvX -
  VNN48_RS07230 (VNN48_07225) - 1481616..1481939 (+) 324 WP_003133632.1 DUF1292 domain-containing protein -
  VNN48_RS07235 (VNN48_07230) - 1482079..1483686 (+) 1608 WP_279358994.1 glycosyltransferase -
  VNN48_RS07240 (VNN48_07235) codY 1483823..1484614 (+) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VNN48_RS07245 (VNN48_07240) gatC 1484761..1485066 (+) 306 WP_017368695.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  VNN48_RS07250 (VNN48_07245) gatA 1485066..1486538 (+) 1473 WP_407280974.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  VNN48_RS07255 (VNN48_07250) gatB 1486540..1487973 (+) 1434 WP_017368697.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  VNN48_RS07260 (VNN48_07255) - 1487988..1489343 (-) 1356 WP_017368698.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=918934 VNN48_RS07240 WP_003133634.1 1483823..1484614(+) (codY) [Lactococcus formosensis strain PAQ-208]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=918934 VNN48_RS07240 WP_003133634.1 1483823..1484614(+) (codY) [Lactococcus formosensis strain PAQ-208]
GTGGCTACTTTACTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTTATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAGCTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACAATTAACGAGCCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGTTTGGGAACCTTCATCTTAT
GGCGTACAGACGGAAAATTCAGTGATGATGATCTTGTGCTTGCAGAGCTTGCAACAACAGTTATCGGTGTTCAACTTTCA
AATCTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGACACAATGGCTAACATGGCAGTCAATACACTTTCGTATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACATGTTATTGCTTCAGTCATTGCCGACA
AGATTGGAATTACACGTTCAGTAATCGTTAATGCACTACGTAAGCTTGAATCTGCTGGTGTTATTGAAAGCCGTTCGTTG
GGAATGAAAGGGACTTACCTCAAAGTTCTTAACCAAGGTTTATTTACAAAGCTTGAAGGTCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483