Detailed information NTG0918926

Bioinformatically predicted

Overview

• Name: comYH
• Type: Machinery gene
• Locus tag: VNN48_RS05685
• Genome accession: NZ_CP141723
• Coordinates: 1173606..1174541 (-)
• Length: 311 a.a.
• NCBI ID: WP_213433136.1
• Uniprot ID: -
• Organism: Lactococcus formosensis strain PAQ-208
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1168606..1179541

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN48_RS05660 (VNN48_05655)	-	1168657..1169517 (-)	861	WP_017368645.1	S1 RNA-binding domain-containing protein	-
VNN48_RS05665 (VNN48_05660)	frr	1169624..1170181 (-)	558	WP_017368646.1	ribosome recycling factor	-
VNN48_RS05670 (VNN48_05665)	pyrH	1170210..1170926 (-)	717	WP_017368647.1	UMP kinase	-
VNN48_RS05675 (VNN48_05670)	-	1171017..1172210 (-)	1194	WP_017368648.1	acetate kinase	-
VNN48_RS05680 (VNN48_05675)	-	1172328..1173521 (-)	1194	WP_017368649.1	acetate kinase	-
VNN48_RS05685 (VNN48_05680)	comYH	1173606..1174541 (-)	936	WP_213433136.1	class I SAM-dependent methyltransferase	Machinery gene
VNN48_RS05690 (VNN48_05685)	-	1174587..1174817 (-)	231	WP_017368651.1	DUF3165 family protein	-
VNN48_RS05695 (VNN48_05690)	typA	1174892..1176733 (-)	1842	WP_017368652.1	translational GTPase TypA	-
VNN48_RS05700 (VNN48_05695)	-	1177052..1177264 (+)	213	WP_003133311.1	YqgQ family protein	-
VNN48_RS05705 (VNN48_05700)	-	1177257..1178225 (+)	969	WP_017368653.1	ROK family glucokinase	-
VNN48_RS05710 (VNN48_05705)	-	1178242..1178622 (+)	381	WP_017368654.1	rhodanese-like domain-containing protein	-
VNN48_RS05715 (VNN48_05710)	-	1178662..1179108 (-)	447	WP_096369051.1	DNA starvation/stationary phase protection protein	-
VNN48_RS05720 (VNN48_05715)	-	1179219..1179470 (+)	252	Protein_1116	prepilin peptidase	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 34961.97 Da
• Isoelectric Point: 4.5506

>NTDB_id=918926 VNN48_RS05685 WP_213433136.1 1173606..1174541(-) (comYH) [Lactococcus formosensis strain PAQ-208]
MDIEKIEKAFGLVLENIMAIQAELMTDFYDAFVEQNAAYLGALELASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRI
APMQANHNLTPDSIGFIFNFIIEELHKDRAIRVLEFGSGTGNLAETLLVHLQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQMDAVKPQPLEAVDVVLSDLPVGYYPDDEAASHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHIAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide

• Length: 936 bp

>NTDB_id=918926 VNN48_RS05685 WP_213433136.1 1173606..1174541(-) (comYH) [Lactococcus formosensis strain PAQ-208]
ATGGATATAGAGAAAATCGAAAAAGCTTTTGGATTGGTCCTTGAGAATATCATGGCAATTCAAGCAGAGCTGATGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCCTTAGAGCTGGCGTCACTGACGAAGGAAAATAACG
ATAAAGTTCGCTCAATGAATCTTACGAAAAGTGAATGGCAAAAGCTGTTTCAGTTTGTCTTGTTACAAGGCTCTCGTATT
GCACCGATGCAAGCAAATCATAATTTAACACCGGACTCTATTGGTTTTATCTTTAATTTCATCATTGAAGAGTTGCACAA
GGACCGAGCGATTCGCGTGTTAGAGTTTGGTTCAGGAACGGGGAATTTAGCGGAAACGCTCTTGGTTCATCTGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGACGATCTCTTATTGGATTTATCTGCTTCAATGTCAGAAGTTATGGGAACAGAA
GCAAGTTTTCTCCAAATGGATGCTGTTAAACCTCAGCCCTTGGAAGCTGTGGACGTTGTCCTAAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAGCTGCTAGCCATTTTCAAGTACATGACAAATCAGAACATACCTATGTGCACCACTTAATGA
TCGAGCAATCCTTCAAGTATTTGAAAGAGAGTGGCTTTGCACTTTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCAGAGTTTTTGAAGGCCTGGATTAAAGAACATGCGCATATTGCTGCAGTCATTACATTACCTTCATCCCTCTTTAAAGG
GGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTGTCTGACTTAGCAG
ACCGCTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

• N-6 DNA Methylase (N6_Mtase) (173-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYH	Streptococcus mutans UA140	50	99.678	0.498
comYH	Streptococcus mutans UA159	49.677	99.678	0.495