Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   VNN39_RS04675 Genome accession   NZ_CP141721
Coordinates   952687..953622 (+) Length   311 a.a.
NCBI ID   WP_338998010.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M04020401 EE5e5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 947687..958622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN39_RS04645 (VNN39_04645) - 948119..948565 (+) 447 WP_096369051.1 Dps family protein -
  VNN39_RS04650 (VNN39_04650) - 948605..948985 (-) 381 WP_017368654.1 rhodanese-like domain-containing protein -
  VNN39_RS04655 (VNN39_04655) - 949002..949970 (-) 969 WP_017368653.1 ROK family glucokinase -
  VNN39_RS04660 (VNN39_04660) - 949963..950175 (-) 213 WP_003133311.1 YqgQ family protein -
  VNN39_RS04665 (VNN39_04665) typA 950495..952336 (+) 1842 WP_339007271.1 translational GTPase TypA -
  VNN39_RS04670 (VNN39_04670) - 952411..952641 (+) 231 WP_017368651.1 DUF3165 family protein -
  VNN39_RS04675 (VNN39_04675) comYH 952687..953622 (+) 936 WP_338998010.1 class I SAM-dependent methyltransferase Machinery gene
  VNN39_RS04680 (VNN39_04680) - 953707..954900 (+) 1194 WP_338998011.1 acetate kinase -
  VNN39_RS04685 (VNN39_04685) - 955018..956211 (+) 1194 WP_165713502.1 acetate kinase -
  VNN39_RS04690 (VNN39_04690) pyrH 956302..957018 (+) 717 WP_019292238.1 UMP kinase -
  VNN39_RS04695 (VNN39_04695) frr 957047..957604 (+) 558 WP_017368646.1 ribosome recycling factor -
  VNN39_RS04700 (VNN39_04700) - 957713..958573 (+) 861 WP_017368645.1 S1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35020.05 Da        Isoelectric Point: 4.5506

>NTDB_id=918907 VNN39_RS04675 WP_338998010.1 952687..953622(+) (comYH) [Lactococcus formosensis strain M04020401 EE5e5]
MDIEKIEKAFGLVLENIMAIQAELMTDFYDAFVEQNAAYLGALELASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRI
APMQANHNLTPDSIGFIFNFIIEELHKDRSIRVLEFGSGTGNLAETLLVHLQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQMDAVKPQPLEAVDVVLSDLPVGYYPDDEAASHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHIAAVITLPSSLFKGAVKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=918907 VNN39_RS04675 WP_338998010.1 952687..953622(+) (comYH) [Lactococcus formosensis strain M04020401 EE5e5]
ATGGATATAGAGAAAATCGAAAAAGCTTTTGGGTTGGTCCTTGAGAATATCATGGCAATTCAAGCAGAGCTGATGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCCTTAGAGCTGGCGTCACTGACGAAGGAAAATAACG
ATAAAGTTCGTTCAATGAATCTTACGAAAAGTGAATGGCAAAAACTGTTTCAGTTTGTCTTGTTACAAGGCTCTCGTATT
GCACCGATGCAAGCAAATCATAATTTAACACCGGACTCTATTGGTTTTATCTTTAATTTCATCATTGAAGAGTTGCACAA
GGACCGATCGATTCGCGTGTTAGAGTTTGGTTCAGGAACGGGGAATTTAGCGGAAACGCTCTTGGTTCATCTGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGACGACCTCTTGTTGGATTTATCTGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATGGATGCTGTTAAACCTCAGCCCTTGGAAGCTGTGGACGTTGTCCTAAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAGCTGCTAGCCATTTTCAAGTACATGACAAATCAGAACATACCTATGTGCACCACTTAATGA
TCGAGCAATCCTTCAAGTATTTGAAAGAGAGTGGCTTTGCACTTTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCAGAGTTTTTGAAGGCCTGGATTAAAGAACATGCACATATTGCTGCAGTCATTACATTACCTTCATCCCTCTTTAAAGG
GGCAGTAAAATCGATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTGTCTGACTTAGCAG
ACCGCTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(173-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

50

99.678

0.498
  comYH Streptococcus mutans UA159

49.677

99.678

0.495