Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VNN39_RS03110 Genome accession   NZ_CP141721
Coordinates   634465..635256 (-) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M04020401 EE5e5     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 629465..640256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN39_RS03090 (VNN39_03090) - 629737..631092 (+) 1356 WP_213495862.1 MATE family efflux transporter -
  VNN39_RS03095 (VNN39_03095) gatB 631106..632539 (-) 1434 WP_338997844.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  VNN39_RS03100 (VNN39_03100) gatA 632541..634013 (-) 1473 WP_165711745.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  VNN39_RS03105 (VNN39_03105) gatC 634013..634318 (-) 306 WP_017368695.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  VNN39_RS03110 (VNN39_03110) codY 634465..635256 (-) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VNN39_RS03115 (VNN39_03115) - 635393..637000 (-) 1608 WP_338997845.1 glycosyltransferase -
  VNN39_RS03120 (VNN39_03120) - 637140..637463 (-) 324 WP_213432759.1 DUF1292 domain-containing protein -
  VNN39_RS03125 (VNN39_03125) ruvX 637478..637906 (-) 429 WP_017368693.1 Holliday junction resolvase RuvX -
  VNN39_RS03130 (VNN39_03130) - 637906..638172 (-) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  VNN39_RS03135 (VNN39_03135) - 638351..639262 (-) 912 WP_338997846.1 aldo/keto reductase -
  VNN39_RS03140 (VNN39_03140) rpmH 639412..639546 (-) 135 WP_003135255.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=918899 VNN39_RS03110 WP_003133634.1 634465..635256(-) (codY) [Lactococcus formosensis strain M04020401 EE5e5]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=918899 VNN39_RS03110 WP_003133634.1 634465..635256(-) (codY) [Lactococcus formosensis strain M04020401 EE5e5]
GTGGCTACTTTACTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTTATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACAATTAACGAGCCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGTTTGGGAACCTTCATCTTAT
GGCGCACAGACGGAAAATTCAGTGATGATGATCTTGTGCTTGCAGAGCTTGCAACAACAGTTATCGGTGTTCAACTTTCA
AATCTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGACACAATGGCTAACATGGCAGTCAATACACTTTCGTATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACATGTTATTGCTTCAGTCATTGCCGACA
AGATTGGGATTACACGTTCAGTAATCGTTAATGCACTACGTAAGCTTGAATCTGCTGGTGTTATTGAAAGCCGTTCGTTG
GGAATGAAAGGGACTTACCTCAAAGTTCTTAACCAAGGTTTATTTACAAAGCTAGAAGGTCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483