Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VNN46_RS03285 Genome accession   NZ_CP141719
Coordinates   668901..669692 (-) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus garvieae strain CAHFS22LA20.5H7     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 663901..674692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN46_RS03265 (VNN46_03265) - 664176..665531 (+) 1356 WP_141921096.1 MATE family efflux transporter -
  VNN46_RS03270 (VNN46_03270) gatB 665544..666977 (-) 1434 WP_003133637.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  VNN46_RS03275 (VNN46_03275) gatA 666979..668451 (-) 1473 WP_141921097.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  VNN46_RS03280 (VNN46_03280) gatC 668451..668756 (-) 306 WP_003133635.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  VNN46_RS03285 (VNN46_03285) codY 668901..669692 (-) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VNN46_RS03290 (VNN46_03290) - 669829..671427 (-) 1599 WP_338962635.1 glycosyltransferase -
  VNN46_RS03295 (VNN46_03295) - 671567..671890 (-) 324 WP_003133632.1 DUF1292 domain-containing protein -
  VNN46_RS03300 (VNN46_03300) ruvX 671905..672333 (-) 429 WP_003133630.1 Holliday junction resolvase RuvX -
  VNN46_RS03305 (VNN46_03305) - 672333..672599 (-) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  VNN46_RS03310 (VNN46_03310) - 672800..673711 (-) 912 WP_003133628.1 aldo/keto reductase family oxidoreductase -
  VNN46_RS03315 (VNN46_03315) rpmH 673860..673994 (-) 135 WP_003135255.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=918809 VNN46_RS03285 WP_003133634.1 668901..669692(-) (codY) [Lactococcus garvieae strain CAHFS22LA20.5H7]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=918809 VNN46_RS03285 WP_003133634.1 668901..669692(-) (codY) [Lactococcus garvieae strain CAHFS22LA20.5H7]
GTGGCTACTTTATTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTGATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACGATTAACGAACCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGCTTGGGAACATTTATCTTAT
GGCGTACAGACGGGAAATTCAGTGATGATGACCTTGTGCTTGCAGAACTTGCAACAACAGTTATCGGTGTTCAACTTTCC
AATCTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACGATGGCCAATATGGCAGTCAATACACTTTCATATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACACGTTATCGCTTCAGTCATTGCCGATA
AGATTGGCATTACCCGTTCAGTAATCGTTAATGCACTGCGTAAGCTTGAATCTGCCGGTGTTATTGAAAGTCGTTCGTTG
GGAATGAAAGGGACTTACCTCAAAGTTCTTAACCAAGGTTTGTTTACAAAACTTGAAGGCCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483