Detailed information NTG0918771

Bioinformatically predicted

Overview

• Name: comYH
• Type: Machinery gene
• Locus tag: VNN36_RS05510
• Genome accession: NZ_CP141717
• Coordinates: 1081512..1082447 (+)
• Length: 311 a.a.
• NCBI ID: WP_014025404.1
• Uniprot ID: A0A6L2ZWA9
• Organism: Lactococcus garvieae strain R22-8
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1076512..1087447

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN36_RS05480 (VNN36_05480)	-	1076945..1077391 (+)	447	WP_003133306.1	Dps family protein	-
VNN36_RS05485 (VNN36_05485)	-	1077429..1077809 (-)	381	WP_003133308.1	rhodanese-like domain-containing protein	-
VNN36_RS05490 (VNN36_05490)	-	1077829..1078794 (-)	966	WP_003133309.1	ROK family glucokinase	-
VNN36_RS05495 (VNN36_05495)	-	1078787..1078999 (-)	213	WP_003133311.1	YqgQ family protein	-
VNN36_RS05500 (VNN36_05500)	typA	1079320..1081161 (+)	1842	WP_003133313.1	translational GTPase TypA	-
VNN36_RS05505 (VNN36_05505)	-	1081236..1081466 (+)	231	WP_003133314.1	DUF3165 family protein	-
VNN36_RS05510 (VNN36_05510)	comYH	1081512..1082447 (+)	936	WP_014025404.1	class I SAM-dependent methyltransferase	Machinery gene
VNN36_RS05515 (VNN36_05515)	-	1082532..1083725 (+)	1194	WP_042218440.1	acetate kinase	-
VNN36_RS05520 (VNN36_05520)	-	1083843..1085036 (+)	1194	WP_003133320.1	acetate kinase	-
VNN36_RS05525 (VNN36_05525)	pyrH	1085127..1085843 (+)	717	WP_003133322.1	UMP kinase	-
VNN36_RS05530 (VNN36_05530)	frr	1085873..1086430 (+)	558	WP_003133324.1	ribosome recycling factor	-
VNN36_RS05535 (VNN36_05535)	-	1086538..1087398 (+)	861	WP_339014387.1	S1 RNA-binding domain-containing protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35138.19 Da
• Isoelectric Point: 4.6737

>NTDB_id=918771 VNN36_RS05510 WP_014025404.1 1081512..1082447(+) (comYH) [Lactococcus garvieae strain R22-8]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRVLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLESVDVVMSDLPVGYYPDDETARHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLADLADRSILQEFMSEFVKNVKI

Nucleotide

• Length: 936 bp

>NTDB_id=918771 VNN36_RS05510 WP_014025404.1 1081512..1082447(+) (comYH) [Lactococcus garvieae strain R22-8]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTGGTTCTTGAAAATATTATGGCAATTCAAGCGGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAGTTTGCATCTCTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAGTGGCAAAAGCTGTTTCAGTTTGTCTTGCTTCAAGGGTCACGTGTC
GCACCAATGCAAGCAAATCATAATTTAACACCAGATTCTATTGGGTTTATCTTTAATTTTATCATTGAAGAGTTGCACAA
AGAAAGAAAGATTCGTGTACTAGAATTTGGCTCAGGAACAGGGAATTTAGCGGAAACGCTCTTGGTTCATATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATTGACGCCGTGAAACCACAGCCCCTGGAGTCTGTAGATGTTGTGATGAGTGATCTCCCGGTTGG
TTATTATCCAGACGATGAAACTGCTCGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCACTTAATGA
TTGAGCAATCCTTTAAGTATCTGAAGGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCAGAATTTTTGAAGGCTTGGATTAAAGAACATGCACATGTTGCTGCAGTCATTACATTGCCTTCATCACTCTTTAAAGG
TGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAAACAAATACACCAACTTTTGTTTACCCCTTGGCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

• N-6 DNA Methylase (N6_Mtase) (132-286)

3D structure

• AlphaFold DB: A0A6L2ZWA9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYH	Streptococcus mutans UA140	49.677	99.678	0.495
comYH	Streptococcus mutans UA159	49.355	99.678	0.492