Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VNN36_RS03580 Genome accession   NZ_CP141717
Coordinates   721755..722546 (-) Length   263 a.a.
NCBI ID   WP_339014087.1    Uniprot ID   -
Organism   Lactococcus garvieae strain R22-8     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 716755..727546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN36_RS03560 (VNN36_03560) - 717030..718385 (+) 1356 WP_339014084.1 MATE family efflux transporter -
  VNN36_RS03565 (VNN36_03565) gatB 718398..719831 (-) 1434 WP_003133637.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  VNN36_RS03570 (VNN36_03570) gatA 719833..721305 (-) 1473 WP_003133636.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  VNN36_RS03575 (VNN36_03575) gatC 721305..721610 (-) 306 WP_003133635.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  VNN36_RS03580 (VNN36_03580) codY 721755..722546 (-) 792 WP_339014087.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VNN36_RS03585 (VNN36_03585) - 722683..724281 (-) 1599 WP_339014090.1 glycosyltransferase -
  VNN36_RS03590 (VNN36_03590) - 724421..724744 (-) 324 WP_003133632.1 DUF1292 domain-containing protein -
  VNN36_RS03595 (VNN36_03595) ruvX 724759..725187 (-) 429 WP_003133630.1 Holliday junction resolvase RuvX -
  VNN36_RS03600 (VNN36_03600) - 725187..725453 (-) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  VNN36_RS03605 (VNN36_03605) - 725654..726565 (-) 912 WP_003133628.1 aldo/keto reductase -
  VNN36_RS03610 (VNN36_03610) rpmH 726714..726848 (-) 135 WP_003135255.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29194.67 Da        Isoelectric Point: 4.8183

>NTDB_id=918764 VNN36_RS03580 WP_339014087.1 721755..722546(-) (codY) [Lactococcus garvieae strain R22-8]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLAKVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=918764 VNN36_RS03580 WP_339014087.1 721755..722546(-) (codY) [Lactococcus garvieae strain R22-8]
GTGGCTACTTTATTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAAAGTGATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACGATTAACGAACCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGCTTGGGAACATTTATCTTAT
GGCGTACAGACGGGAAATTCAGTGATGATGACCTTGTGCTTGCAGAACTTGCAACAACAGTTATCGGTGTTCAACTTTCC
AATCTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACGATGGCCAATATGGCAGTCAATACACTTTCATATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGCCACGTTATCGCTTCAGTCATTGCCGATA
AGATTGGCATTACCCGTTCAGTAATCGTTAATGCACTGCGTAAGCTTGAATCTGCCGGTGTTATTGAAAGTCGTTCGTTG
GGAATGAAGGGAACTTACCTCAAAGTTCTCAACCAAGGTTTGTTTACAAAACTTGAAGGCCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

81.749

100

0.817
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483