Detailed information NTG0918701

Bioinformatically predicted

Overview

• Name: comYH
• Type: Machinery gene
• Locus tag: VNN41_RS05215
• Genome accession: NZ_CP141713
• Coordinates: 1040309..1041244 (-)
• Length: 311 a.a.
• NCBI ID: WP_407350936.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain VC11
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1035309..1046244

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN41_RS05190 (VNN41_05175)	-	1035357..1036217 (-)	861	WP_003133325.1	S1 RNA-binding domain-containing protein	-
VNN41_RS05195 (VNN41_05180)	frr	1036325..1036882 (-)	558	WP_003133324.1	ribosome recycling factor	-
VNN41_RS05200 (VNN41_05185)	pyrH	1036912..1037628 (-)	717	WP_003133322.1	UMP kinase	-
VNN41_RS05205 (VNN41_05190)	-	1037719..1038912 (-)	1194	WP_042218438.1	acetate kinase	-
VNN41_RS05210 (VNN41_05195)	-	1039031..1040224 (-)	1194	WP_407350935.1	acetate kinase	-
VNN41_RS05215 (VNN41_05200)	comYH	1040309..1041244 (-)	936	WP_407350936.1	class I SAM-dependent methyltransferase	Machinery gene
VNN41_RS05220 (VNN41_05205)	-	1041290..1041520 (-)	231	WP_003133314.1	DUF3165 family protein	-
VNN41_RS05225 (VNN41_05210)	typA	1041596..1043437 (-)	1842	WP_003133313.1	translational GTPase TypA	-
VNN41_RS05230 (VNN41_05215)	-	1043758..1043970 (+)	213	WP_003133311.1	YqgQ family protein	-
VNN41_RS05235 (VNN41_05220)	-	1043963..1044928 (+)	966	WP_003133309.1	ROK family glucokinase	-
VNN41_RS05240 (VNN41_05225)	-	1044948..1045328 (+)	381	WP_003133308.1	rhodanese-like domain-containing protein	-
VNN41_RS05245 (VNN41_05230)	-	1045368..1045814 (-)	447	WP_003133306.1	DNA starvation/stationary phase protection protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35150.25 Da
• Isoelectric Point: 4.6693

>NTDB_id=918701 VNN41_RS05215 WP_407350936.1 1040309..1041244(-) (comYH) [Lactococcus garvieae strain VC11]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRLMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRVLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLESVDVVMSDLPVGYYPDDDTARHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLADLADRSILQEFMSEFVKNVKI

Nucleotide

• Length: 936 bp

>NTDB_id=918701 VNN41_RS05215 WP_407350936.1 1040309..1041244(-) (comYH) [Lactococcus garvieae strain VC11]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTGGTTCTTGAAAATATTATGGCAATTCAAGCGGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAGTTTGCATCTCTGACGAAGGAAAATAATG
ATAAGGTTCGTTTAATGAATCTCACGAAAAGTGAGTGGCAAAAGCTGTTTCAGTTTGTCTTGCTTCAAGGGTCACGTGTC
GCACCAATGCAAGCAAATCATAATTTAACACCAGATTCTATTGGGTTTATCTTTAATTTCATCATTGAAGAGTTGCACAA
AGAAAGAAAGATTCGTGTACTAGAATTTGGCTCAGGAACAGGGAATTTAGCGGAAACGCTCTTGGTTCATATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATTGACGCCGTGAAACCACAGCCCTTGGAGTCTGTAGATGTTGTGATGAGTGATCTCCCGGTTGG
TTATTATCCAGACGATGACACTGCTCGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCACTTAATGA
TTGAGCAATCCTTTAAGTATCTGAAGGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCAGAGTTTTTAAAGGCTTGGATTAAAGAACATGCACATGTTGCTGCAGTCATTACATTGCCTTCATCACTCTTTAAAGG
TGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAAACAAATACACCAACTTTTGTTTACCCCTTGGCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

• N-6 DNA Methylase (N6_Mtase) (132-286)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYH	Streptococcus mutans UA140	49.677	99.678	0.495
comYH	Streptococcus mutans UA159	49.355	99.678	0.492