Detailed information NTG0918657

Bioinformatically predicted

Overview

• Name: comYH
• Type: Machinery gene
• Locus tag: VNN47_RS05215
• Genome accession: NZ_CP141709
• Coordinates: 1040319..1041254 (-)
• Length: 311 a.a.
• NCBI ID: WP_407350936.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain VC13
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1035319..1046254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN47_RS05190 (VNN47_05165)	-	1035367..1036227 (-)	861	WP_003133325.1	S1 RNA-binding domain-containing protein	-
VNN47_RS05195 (VNN47_05170)	frr	1036335..1036892 (-)	558	WP_003133324.1	ribosome recycling factor	-
VNN47_RS05200 (VNN47_05175)	pyrH	1036922..1037638 (-)	717	WP_003133322.1	UMP kinase	-
VNN47_RS05205 (VNN47_05180)	-	1037729..1038922 (-)	1194	WP_042218438.1	acetate kinase	-
VNN47_RS05210 (VNN47_05185)	-	1039041..1040234 (-)	1194	WP_407350935.1	acetate kinase	-
VNN47_RS05215 (VNN47_05190)	comYH	1040319..1041254 (-)	936	WP_407350936.1	class I SAM-dependent methyltransferase	Machinery gene
VNN47_RS05220 (VNN47_05195)	-	1041300..1041530 (-)	231	WP_003133314.1	DUF3165 family protein	-
VNN47_RS05225 (VNN47_05200)	typA	1041606..1043447 (-)	1842	WP_003133313.1	translational GTPase TypA	-
VNN47_RS05230 (VNN47_05205)	-	1043768..1043980 (+)	213	WP_003133311.1	YqgQ family protein	-
VNN47_RS05235 (VNN47_05210)	-	1043973..1044938 (+)	966	WP_003133309.1	ROK family glucokinase	-
VNN47_RS05240 (VNN47_05215)	-	1044958..1045338 (+)	381	WP_003133308.1	rhodanese-like domain-containing protein	-
VNN47_RS05245 (VNN47_05220)	-	1045378..1045824 (-)	447	WP_003133306.1	DNA starvation/stationary phase protection protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35150.25 Da
• Isoelectric Point: 4.6693

>NTDB_id=918657 VNN47_RS05215 WP_407350936.1 1040319..1041254(-) (comYH) [Lactococcus garvieae strain VC13]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRLMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRVLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLESVDVVMSDLPVGYYPDDDTARHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLADLADRSILQEFMSEFVKNVKI

Nucleotide

• Length: 936 bp

>NTDB_id=918657 VNN47_RS05215 WP_407350936.1 1040319..1041254(-) (comYH) [Lactococcus garvieae strain VC13]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTGGTTCTTGAAAATATTATGGCAATTCAAGCGGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAGTTTGCATCTCTGACGAAGGAAAATAATG
ATAAGGTTCGTTTAATGAATCTCACGAAAAGTGAGTGGCAAAAGCTGTTTCAGTTTGTCTTGCTTCAAGGGTCACGTGTC
GCACCAATGCAAGCAAATCATAATTTAACACCAGATTCTATTGGGTTTATCTTTAATTTCATCATTGAAGAGTTGCACAA
AGAAAGAAAGATTCGTGTACTAGAATTTGGCTCAGGAACAGGGAATTTAGCGGAAACGCTCTTGGTTCATATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATTGACGCCGTGAAACCACAGCCCTTGGAGTCTGTAGATGTTGTGATGAGTGATCTCCCGGTTGG
TTATTATCCAGACGATGACACTGCTCGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCACTTAATGA
TTGAGCAATCCTTTAAGTATCTGAAGGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCAGAGTTTTTAAAGGCTTGGATTAAAGAACATGCACATGTTGCTGCAGTCATTACATTGCCTTCATCACTCTTTAAAGG
TGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAAACAAATACACCAACTTTTGTTTACCCCTTGGCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

• N-6 DNA Methylase (N6_Mtase) (132-286)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYH	Streptococcus mutans UA140	49.677	99.678	0.495
comYH	Streptococcus mutans UA159	49.355	99.678	0.492