Detailed information NTG0918637

Bioinformatically predicted

Overview

• Name: comYH
• Type: Machinery gene
• Locus tag: VNN37_RS05175
• Genome accession: NZ_CP141707
• Coordinates: 1020699..1021634 (+)
• Length: 311 a.a.
• NCBI ID: WP_014025404.1
• Uniprot ID: A0A6L2ZWA9
• Organism: Lactococcus garvieae strain M21102102
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1015699..1026634

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN37_RS05145 (VNN37_05145)	-	1016132..1016578 (+)	447	WP_003133306.1	Dps family protein	-
VNN37_RS05150 (VNN37_05150)	-	1016616..1016996 (-)	381	WP_003133308.1	rhodanese-like domain-containing protein	-
VNN37_RS05155 (VNN37_05155)	-	1017016..1017981 (-)	966	WP_003133309.1	ROK family glucokinase	-
VNN37_RS05160 (VNN37_05160)	-	1017974..1018186 (-)	213	WP_003133311.1	YqgQ family protein	-
VNN37_RS05165 (VNN37_05165)	typA	1018507..1020348 (+)	1842	WP_003133313.1	translational GTPase TypA	-
VNN37_RS05170 (VNN37_05170)	-	1020423..1020653 (+)	231	WP_003133314.1	DUF3165 family protein	-
VNN37_RS05175 (VNN37_05175)	comYH	1020699..1021634 (+)	936	WP_014025404.1	class I SAM-dependent methyltransferase	Machinery gene
VNN37_RS05180 (VNN37_05180)	-	1021719..1022912 (+)	1194	WP_042218440.1	acetate kinase	-
VNN37_RS05185 (VNN37_05185)	-	1023031..1024224 (+)	1194	WP_003133320.1	acetate kinase	-
VNN37_RS05190 (VNN37_05190)	pyrH	1024315..1025031 (+)	717	WP_003133322.1	UMP kinase	-
VNN37_RS05195 (VNN37_05195)	frr	1025061..1025618 (+)	558	WP_003133324.1	ribosome recycling factor	-
VNN37_RS05200 (VNN37_05200)	-	1025726..1026586 (+)	861	WP_003133325.1	S1 RNA-binding domain-containing protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35138.19 Da
• Isoelectric Point: 4.6737

>NTDB_id=918637 VNN37_RS05175 WP_014025404.1 1020699..1021634(+) (comYH) [Lactococcus garvieae strain M21102102]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRVLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLESVDVVMSDLPVGYYPDDETARHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLADLADRSILQEFMSEFVKNVKI

Nucleotide

• Length: 936 bp

>NTDB_id=918637 VNN37_RS05175 WP_014025404.1 1020699..1021634(+) (comYH) [Lactococcus garvieae strain M21102102]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTGGTTCTTGAAAATATTATGGCAATTCAAGCGGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAGTTTGCATCTCTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAGTGGCAAAAGCTGTTTCAGTTTGTCTTGCTTCAAGGGTCACGTGTC
GCACCAATGCAAGCAAATCATAATTTAACACCAGATTCTATTGGGTTTATCTTTAATTTCATCATTGAAGAGTTGCACAA
AGAAAGAAAGATTCGTGTACTAGAATTTGGCTCAGGAACAGGGAATTTAGCGGAAACGCTCTTGGTTCATATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATTGACGCCGTGAAACCACAGCCCTTGGAGTCTGTAGATGTTGTGATGAGTGATCTCCCGGTTGG
TTATTATCCAGACGATGAAACTGCTCGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCACTTAATGA
TTGAGCAATCCTTTAAGTATCTGAAGGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCAGAATTTTTGAAGGCTTGGATTAAAGAACATGCACATGTTGCTGCAGTCATTACATTGCCTTCATCACTCTTTAAAGG
TGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAAACAAATACACCAACTTTTGTTTACCCCTTGGCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

• N-6 DNA Methylase (N6_Mtase) (132-286)

3D structure

• AlphaFold DB: A0A6L2ZWA9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYH	Streptococcus mutans UA140	49.677	99.678	0.495
comYH	Streptococcus mutans UA159	49.355	99.678	0.492