Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VNN32_RS04455 Genome accession   NZ_CP141703
Coordinates   827645..828436 (+) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus petauri strain R21-74 AL-1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 822645..833436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN32_RS04425 (VNN32_04420) rpmH 823333..823467 (+) 135 WP_003135255.1 50S ribosomal protein L34 -
  VNN32_RS04430 (VNN32_04425) - 823617..824528 (+) 912 WP_019336039.1 aldo/keto reductase -
  VNN32_RS04435 (VNN32_04430) - 824729..824995 (+) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  VNN32_RS04440 (VNN32_04435) ruvX 824995..825423 (+) 429 WP_003133630.1 Holliday junction resolvase RuvX -
  VNN32_RS04445 (VNN32_04440) - 825438..825761 (+) 324 WP_003133632.1 DUF1292 domain-containing protein -
  VNN32_RS04450 (VNN32_04445) - 825901..827508 (+) 1608 WP_019336037.1 hypothetical protein -
  VNN32_RS04455 (VNN32_04450) codY 827645..828436 (+) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VNN32_RS04460 (VNN32_04455) gatC 828582..828887 (+) 306 WP_017368695.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  VNN32_RS04465 (VNN32_04460) gatA 828887..830359 (+) 1473 WP_019291916.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  VNN32_RS04470 (VNN32_04465) gatB 830361..831794 (+) 1434 WP_019336035.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  VNN32_RS04475 (VNN32_04470) - 831809..833164 (-) 1356 WP_046401160.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=918574 VNN32_RS04455 WP_003133634.1 827645..828436(+) (codY) [Lactococcus petauri strain R21-74 AL-1]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=918574 VNN32_RS04455 WP_003133634.1 827645..828436(+) (codY) [Lactococcus petauri strain R21-74 AL-1]
GTGGCTACTTTACTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTTATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTACGACACTTTAGCAAATATCACAATTAACGAGCCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGCTTGGGAACCTTCATCTTAT
GGCGTACAGACGGAAAATTCAGTGATGATGATCTTGTGCTTGCAGAGCTTGCAACAACAGTTATCGGTGTTCAACTTTCA
AATCTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGACACGATGGCTAACATGGCAGTCAATACACTTTCGTATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACATGTTATTGCTTCAGTCATTGCCGACA
AGATTGGAATTACACGTTCAGTAATCGTTAATGCACTACGTAAGCTTGAATCTGCTGGTGTTATTGAAAGCCGTTCGTTG
GGAATGAAAGGGACTTACCTAAAAGTTCTTAACCAAGGTTTATTTACAAAGCTTGAAGGTCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483