Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OC193_RS00665 Genome accession   NZ_AP025476
Coordinates   141504..142217 (-) Length   237 a.a.
NCBI ID   WP_165886735.1    Uniprot ID   A0A0T7DN03
Organism   Vibrio crassostreae strain LMG 22240     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 136504..147217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS00640 - 137724..138212 (+) 489 WP_048661305.1 type II secretion system protein M -
  OC193_RS00645 - 138214..138993 (+) 780 WP_048663062.1 type II secretion system protein N -
  OC193_RS00650 cysQ 139097..139924 (-) 828 WP_048663063.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OC193_RS00655 nudE 139960..140511 (-) 552 WP_048663064.1 ADP compounds hydrolase NudE -
  OC193_RS00660 nfuA 140810..141394 (-) 585 WP_048661415.1 Fe-S biogenesis protein NfuA -
  OC193_RS00665 comF 141504..142217 (-) 714 WP_165886735.1 ComF family protein Machinery gene
  OC193_RS00670 bioH 142311..143087 (+) 777 WP_048663065.1 pimeloyl-ACP methyl ester esterase BioH -
  OC193_RS00675 - 143429..143902 (+) 474 WP_048661309.1 hypothetical protein -
  OC193_RS00680 - 144184..146514 (-) 2331 WP_048663066.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27116.43 Da        Isoelectric Point: 8.8787

>NTDB_id=91857 OC193_RS00665 WP_165886735.1 141504..142217(-) (comF) [Vibrio crassostreae strain LMG 22240]
MLSDWLQKHTPRLVTPQCHLCKLDKLPEDAHPRWCNSCLKLFEPVPRCQRCGLKTLTTVDQCGECLANPPLWHRLYCVGD
YTFPTAGYIQQMKYADKFWFARDLSKLLASRIDQPAPLLTSVPLHWRRYTHRGFNQSQLLANYTAQELGVKDEVLFRRIR
STASQQGLTKSARLHNLKSAFALRKQDFQGTIPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=91857 OC193_RS00665 WP_165886735.1 141504..142217(-) (comF) [Vibrio crassostreae strain LMG 22240]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACCTGTGTAAGCTCGATAAGCTTCC
CGAAGACGCACATCCTCGATGGTGCAATTCTTGTCTCAAGCTCTTTGAACCTGTACCACGCTGTCAAAGATGTGGCTTAA
AAACACTGACCACTGTCGATCAATGTGGTGAGTGCTTAGCTAATCCTCCGCTTTGGCATCGGCTCTATTGCGTCGGTGAT
TACACCTTCCCAACAGCAGGCTATATCCAACAAATGAAATACGCTGATAAGTTTTGGTTTGCACGTGATCTGTCTAAGCT
ATTGGCATCACGTATCGATCAACCGGCTCCGTTGCTCACCAGCGTACCGCTGCATTGGCGCCGATACACCCATCGCGGCT
TTAATCAAAGTCAGCTACTGGCCAATTACACAGCTCAAGAGCTTGGCGTTAAAGATGAGGTGTTGTTTCGTCGAATTCGC
TCAACAGCTTCCCAGCAGGGGCTGACTAAATCCGCACGATTACACAATCTAAAGAGCGCTTTTGCGCTGCGAAAACAAGA
CTTTCAAGGAACTATCCCCTCTCACGTCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7DN03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.78

99.578

0.565
  comF Vibrio campbellii strain DS40M4

50.407

100

0.523

Multiple sequence alignment