Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   VNN32_RS02475 Genome accession   NZ_CP141703
Coordinates   467260..468195 (-) Length   311 a.a.
NCBI ID   WP_046400842.1    Uniprot ID   -
Organism   Lactococcus petauri strain R21-74 AL-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 462260..473195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN32_RS02450 (VNN32_02450) - 462309..463169 (-) 861 WP_338976189.1 S1 RNA-binding domain-containing protein -
  VNN32_RS02455 (VNN32_02455) frr 463277..463834 (-) 558 WP_017368646.1 ribosome recycling factor -
  VNN32_RS02460 (VNN32_02460) pyrH 463863..464579 (-) 717 WP_019292238.1 UMP kinase -
  VNN32_RS02465 (VNN32_02465) - 464670..465863 (-) 1194 WP_019294231.1 acetate kinase -
  VNN32_RS02470 (VNN32_02470) - 465982..467175 (-) 1194 WP_338976191.1 acetate kinase -
  VNN32_RS02475 (VNN32_02475) comYH 467260..468195 (-) 936 WP_046400842.1 class I SAM-dependent methyltransferase Machinery gene
  VNN32_RS02480 (VNN32_02480) - 468241..468471 (-) 231 WP_019292242.1 DUF3165 family protein -
  VNN32_RS02485 (VNN32_02485) typA 468546..470387 (-) 1842 WP_338976194.1 translational GTPase TypA -
  VNN32_RS02490 (VNN32_02490) - 470708..470920 (+) 213 WP_003133311.1 YqgQ family protein -
  VNN32_RS02495 (VNN32_02495) - 470913..471878 (+) 966 WP_046400843.1 ROK family glucokinase -
  VNN32_RS02500 (VNN32_02500) - 471898..472278 (+) 381 WP_019292245.1 rhodanese-like domain-containing protein -
  VNN32_RS02505 (VNN32_02505) - 472317..472763 (-) 447 WP_003133306.1 Dps family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35037.09 Da        Isoelectric Point: 4.6599

>NTDB_id=918567 VNN32_RS02475 WP_046400842.1 467260..468195(-) (comYH) [Lactococcus petauri strain R21-74 AL-1]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKGRKIRLLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLEPVDVVMSDLPVGYYPDDETASHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=918567 VNN32_RS02475 WP_046400842.1 467260..468195(-) (comYH) [Lactococcus petauri strain R21-74 AL-1]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTAGTTCTTGAGAATATTATGGCAATTCAAGCAGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAATTTGCGTCACTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAATGGCAAAAGCTGTTTCAGTTTGTTTTGCTTCAGGGGTCACGTGTC
GCACCAATGCAGGCAAATCATAATTTAACTCCGGATTCTATTGGTTTCATCTTTAATTTTATCATTGAGGAGTTGCACAA
AGGAAGAAAGATTCGTTTACTAGAATTTGGCTCAGGAACGGGGAATTTGGCGGAAACGCTTTTGGTTCACATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACGGAA
GCAAGTTTTCTCCAAATCGATGCCGTTAAACCACAGCCCTTGGAACCTGTGGATGTTGTAATGAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAACAGCCAGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCATTTAATGA
TTGAGCAATCCTTCAAATATCTGAAAGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCTGAGTTTTTGAAGGCTTGGATTAAAGAGCATGCGCATGTTGCTGCAGTTATTACATTACCTTCATCACTCTTTAAAGG
TGCAGGGAAATCAATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTGTCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTTAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(173-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.677

99.678

0.495
  comYH Streptococcus mutans UA159

49.355

99.678

0.492