Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VNN52_RS03175 Genome accession   NZ_CP141701
Coordinates   649425..650216 (-) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus petauri strain M18012501 FF2g6     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 644425..655216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN52_RS03155 (VNN52_03150) - 644697..646052 (+) 1356 WP_153924320.1 MATE family efflux transporter -
  VNN52_RS03160 (VNN52_03155) gatB 646067..647500 (-) 1434 WP_019291915.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  VNN52_RS03165 (VNN52_03160) gatA 647502..648974 (-) 1473 WP_153924316.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  VNN52_RS03170 (VNN52_03165) gatC 648974..649279 (-) 306 WP_019291917.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  VNN52_RS03175 (VNN52_03170) codY 649425..650216 (-) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VNN52_RS03180 (VNN52_03175) - 650353..651951 (-) 1599 WP_153924312.1 glycosyltransferase -
  VNN52_RS03185 (VNN52_03180) - 652091..652414 (-) 324 WP_003133632.1 DUF1292 domain-containing protein -
  VNN52_RS03190 (VNN52_03185) ruvX 652429..652857 (-) 429 WP_407346581.1 Holliday junction resolvase RuvX -
  VNN52_RS03195 (VNN52_03190) - 652857..653123 (-) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  VNN52_RS03200 (VNN52_03195) - 653324..654235 (-) 912 WP_019291919.1 aldo/keto reductase family oxidoreductase -
  VNN52_RS03205 (VNN52_03200) rpmH 654385..654519 (-) 135 WP_003135255.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=918542 VNN52_RS03175 WP_003133634.1 649425..650216(-) (codY) [Lactococcus petauri strain M18012501 FF2g6]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=918542 VNN52_RS03175 WP_003133634.1 649425..650216(-) (codY) [Lactococcus petauri strain M18012501 FF2g6]
GTGGCTACTTTACTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTTATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTACGACACTTTAGCAAATATCACAATTAACGAGCCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGCTTGGGAACCTTCATCTTAT
GGCGTACAGACGGAAAATTCAGTGATGATGATCTTGTGCTTGCAGAGCTTGCAACAACAGTTATCGGTGTTCAACTTTCA
AATCTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGACACGATGGCTAACATGGCAGTCAATACACTTTCGTATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACATGTTATTGCTTCAGTCATTGCCGACA
AGATTGGAATTACACGTTCAGTAATCGTTAATGCACTACGTAAGCTTGAATCTGCTGGTGTTATTGAAAGCCGTTCGTTG
GGAATGAAAGGGACTTACCTAAAAGTTCTTAACCAAGGTTTATTTACAAAGCTTGAAGGTCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483