Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   VNN27_RS04770 Genome accession   NZ_CP141700
Coordinates   967493..968428 (+) Length   311 a.a.
NCBI ID   WP_346350205.1    Uniprot ID   -
Organism   Lactococcus petauri strain R22-25 IC35     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 962493..973428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN27_RS04740 (VNN27_04740) - 962922..963368 (+) 447 WP_003133306.1 Dps family protein -
  VNN27_RS04745 (VNN27_04745) - 963406..963786 (-) 381 WP_019292245.1 rhodanese-like domain-containing protein -
  VNN27_RS04750 (VNN27_04750) - 963806..964771 (-) 966 WP_019292244.1 ROK family glucokinase -
  VNN27_RS04755 (VNN27_04755) - 964764..964976 (-) 213 WP_003133311.1 YqgQ family protein -
  VNN27_RS04760 (VNN27_04760) typA 965297..967138 (+) 1842 WP_019335381.1 translational GTPase TypA -
  VNN27_RS04765 (VNN27_04765) - 967217..967447 (+) 231 WP_019292242.1 DUF3165 family protein -
  VNN27_RS04770 (VNN27_04770) comYH 967493..968428 (+) 936 WP_346350205.1 class I SAM-dependent methyltransferase Machinery gene
  VNN27_RS04775 (VNN27_04775) - 968513..969706 (+) 1194 WP_019294232.1 acetate kinase -
  VNN27_RS04780 (VNN27_04780) - 969825..971018 (+) 1194 WP_019294231.1 acetate kinase -
  VNN27_RS04785 (VNN27_04785) pyrH 971109..971825 (+) 717 WP_019292238.1 UMP kinase -
  VNN27_RS04790 (VNN27_04790) frr 971854..972411 (+) 558 WP_017368646.1 ribosome recycling factor -
  VNN27_RS04795 (VNN27_04795) - 972521..973381 (+) 861 WP_346350206.1 S1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35136.18 Da        Isoelectric Point: 4.6120

>NTDB_id=918503 VNN27_RS04770 WP_346350205.1 967493..968428(+) (comYH) [Lactococcus petauri strain R22-25 IC35]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFAALTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRLLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLEPVDVVMSDLPVGYYPDDETASHFQVHDKSEHTYVHHLMIEQSFKYLKENGFSLFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=918503 VNN27_RS04770 WP_346350205.1 967493..968428(+) (comYH) [Lactococcus petauri strain R22-25 IC35]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTAGTTCTTGAGAATATTATGGCAATTCAAGCAGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAATTTGCGGCACTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAATGGCAAAAGCTGTTTCAGTTTGTTTTGCTTCAGGGGTCACGTGTC
GCACCAATGCAGGCAAATCATAATTTAACTCCGGATTCTATTGGTTTCATCTTTAATTTTATCATTGAGGAGTTACACAA
AGAAAGAAAGATTCGTTTACTAGAATTTGGCTCAGGAACGGGGAATTTGGCGGAAACGCTTTTGGTTCACATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATCGATGCCGTTAAACCACAGCCCTTGGAACCTGTGGATGTTGTGATGAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAACAGCCAGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCATTTAATGA
TTGAGCAATCCTTCAAATATCTGAAAGAGAATGGTTTTTCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCTGAGTTTTTGAAGGCTTGGATTAAAGAGCATGCGCATGTTGCTGCAGTTATTACATTACCTTCATCACTCTTTAAAGG
TGCAGGGAAATCAATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTGTCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTTAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(173-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.355

99.678

0.492
  comYH Streptococcus mutans UA159

49.032

99.678

0.489