Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VNN45_RS03170 Genome accession   NZ_CP141698
Coordinates   645973..646764 (-) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus petauri strain R21-91A     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 640973..651764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN45_RS03150 (VNN45_03150) - 641246..642601 (+) 1356 WP_019293043.1 MATE family efflux transporter -
  VNN45_RS03155 (VNN45_03155) gatB 642615..644048 (-) 1434 WP_019293044.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  VNN45_RS03160 (VNN45_03160) gatA 644050..645522 (-) 1473 WP_338955509.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  VNN45_RS03165 (VNN45_03165) gatC 645522..645827 (-) 306 WP_017368695.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  VNN45_RS03170 (VNN45_03170) codY 645973..646764 (-) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VNN45_RS03175 (VNN45_03175) - 646901..648508 (-) 1608 WP_019293819.1 hypothetical protein -
  VNN45_RS03180 (VNN45_03180) - 648649..648972 (-) 324 WP_003133632.1 DUF1292 domain-containing protein -
  VNN45_RS03185 (VNN45_03185) ruvX 648987..649415 (-) 429 WP_003133630.1 Holliday junction resolvase RuvX -
  VNN45_RS03190 (VNN45_03190) - 649415..649681 (-) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  VNN45_RS03195 (VNN45_03195) - 649871..650782 (-) 912 WP_019291919.1 aldo/keto reductase -
  VNN45_RS03200 (VNN45_03200) rpmH 650932..651066 (-) 135 WP_003135255.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=918406 VNN45_RS03170 WP_003133634.1 645973..646764(-) (codY) [Lactococcus petauri strain R21-91A]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=918406 VNN45_RS03170 WP_003133634.1 645973..646764(-) (codY) [Lactococcus petauri strain R21-91A]
GTGGCTACTTTACTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTTATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTACGACACTTTAGCAAATATCACAATTAACGAGCCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGCTTGGGAACATTCATCTTAT
GGCGTACAGACGGAAAATTCAGTGATGATGATCTTGTGCTTGCAGAGCTTGCAACAACAGTTATCGGTGTTCAACTTTCA
AATCTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGACACGATGGCTAACATGGCAGTCAATACACTTTCGTATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACATGTTATTGCTTCAGTCATTGCCGACA
AGATTGGAATTACACGTTCAGTAATTGTTAATGCACTACGTAAGCTTGAATCTGCTGGTGTTATTGAAAGCCGTTCGTTG
GGAATGAAAGGGACTTACCTCAAAGTTCTTAACCAAGGTTTATTTACAAAGCTTGAAGGTCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483