Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABZO29_RS36675 Genome accession   NZ_CP160403
Coordinates   8040882..8042237 (+) Length   451 a.a.
NCBI ID   WP_367324498.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS ZL42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8035882..8047237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZO29_RS36650 (ABZO29_36650) - 8036500..8037123 (-) 624 WP_367324493.1 response regulator -
  ABZO29_RS36655 (ABZO29_36655) - 8037120..8038328 (-) 1209 WP_367324494.1 sensor histidine kinase -
  ABZO29_RS36660 (ABZO29_36660) - 8038325..8039170 (-) 846 WP_367324495.1 ABC transporter permease -
  ABZO29_RS36665 (ABZO29_36665) - 8039167..8040033 (-) 867 WP_367324496.1 ABC transporter ATP-binding protein -
  ABZO29_RS36670 (ABZO29_36670) - 8040177..8040836 (+) 660 WP_367324497.1 vitamin K epoxide reductase family protein -
  ABZO29_RS36675 (ABZO29_36675) rarA 8040882..8042237 (+) 1356 WP_367324498.1 replication-associated recombination protein A Machinery gene
  ABZO29_RS36680 (ABZO29_36680) rpsD 8042555..8043169 (+) 615 WP_367324499.1 30S ribosomal protein S4 -
  ABZO29_RS36685 (ABZO29_36685) - 8043556..8043951 (-) 396 Protein_7245 AAA family ATPase -
  ABZO29_RS36690 (ABZO29_36690) - 8044163..8044615 (+) 453 WP_367324500.1 DUF948 domain-containing protein -
  ABZO29_RS36695 (ABZO29_36695) - 8044625..8044984 (+) 360 WP_367324501.1 hypothetical protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48216.65 Da        Isoelectric Point: 6.3807

>NTDB_id=918387 ABZO29_RS36675 WP_367324498.1 8040882..8042237(+) (rarA) [Streptomyces sp. HUAS ZL42]
MEPDLFTAAAEERQEKDPAGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRGLIKRALTDERGLKDAVTLPEDTEEHLLRIAGGDARRALTALEAAAGAALDQGESE
ISLQTLEQTVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPGAL
PIAVAAAQAVALIGFPEAALTLSHATIALALAPKSNSATTAIGAAMDDVRKGLAGPVPPHLRDGHYKGAAKLGHAQGYVY
PHDVPEGIAAQQYAPDALKDREYYAPTRHGAEARYADAVEWTRKHLGRRRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=918387 ABZO29_RS36675 WP_367324498.1 8040882..8042237(+) (rarA) [Streptomyces sp. HUAS ZL42]
GTGGAGCCCGACCTGTTCACCGCAGCCGCAGAAGAACGCCAGGAGAAGGATCCGGCAGGAAGCCCCCTGGCGGTCCGGAT
GCGCCCGCGCACCCTCGACGAGGTGGTGGGCCAGCAGCACCTGCTGAAGCCGGGCTCGCCCCTGCGCCGCCTGGTCGGCG
AGGGCGCGGGCGGCCCCGCCGGCCCGTCCTCGGTCATCCTCTGGGGCCCGCCCGGCACCGGCAAGACGACCTTGGCGTAC
GTCGTCTCGAAGGCCACCAACAAGCGCTTCGTCGAACTGTCGGCGATCACCGCGGGCGTGAAGGAGGTCCGGGCGGTCAT
CGACGGCGCCCGCCGCGCCACCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTCCTCCCGGCCGTCGAGAACCGCTGGGTGACCCTGATCGCGGCGACCACCGAGAACCCGTACTTC
TCGGTGATCTCCCCGTTGCTGTCCCGCTCCCTTCTCCTCACCCTCGAACCCCTCACCGACGACGACCTGCGCGGCCTCAT
CAAGCGCGCCCTCACCGACGAGCGCGGCCTCAAGGACGCGGTCACGCTCCCCGAGGACACCGAGGAGCACCTGCTGCGGA
TCGCCGGCGGCGACGCCCGGCGCGCCCTGACGGCCCTGGAGGCCGCCGCCGGAGCCGCACTGGACCAGGGTGAGAGCGAG
ATCAGCCTCCAGACCCTGGAGCAGACGGTCGACCGGGCCGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
CGCCAGCGCGCTCATCAAGTCAATCCGCGGCTCCGACGTCGACGCCGCCCTGCACTACCTGGCCCGGATGATCGAGGCCG
GCGAGGACCCCCGCTTCATCGCCCGCCGCCTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGATCCGGGCGCCCTG
CCGATCGCGGTCGCCGCCGCCCAGGCCGTCGCCCTGATCGGCTTCCCCGAGGCCGCCCTCACCCTCAGCCACGCCACCAT
CGCCCTCGCCCTGGCCCCCAAGTCCAACTCCGCGACCACGGCGATCGGCGCCGCCATGGACGACGTACGCAAGGGACTGG
CCGGACCCGTCCCGCCGCACCTGCGCGACGGGCACTACAAGGGAGCCGCCAAACTGGGCCACGCACAGGGGTACGTCTAT
CCGCACGACGTGCCCGAGGGCATCGCCGCCCAGCAGTACGCCCCGGACGCCCTCAAGGACCGCGAGTACTACGCCCCGAC
CCGGCACGGCGCCGAGGCGCGATACGCGGACGCCGTCGAGTGGACCAGGAAGCACCTCGGTCGCAGGCGGTCCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(199-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.88

96.009

0.421