Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   VNN38_RS04790 Genome accession   NZ_CP141697
Coordinates   967860..968795 (+) Length   311 a.a.
NCBI ID   WP_019292241.1    Uniprot ID   A0AAJ2IZ38
Organism   Lactococcus petauri strain R21-77-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 962860..973795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN38_RS04760 (VNN38_04760) - 963293..963739 (+) 447 WP_003133306.1 Dps family protein -
  VNN38_RS04765 (VNN38_04765) - 963778..964158 (-) 381 WP_019292245.1 rhodanese-like domain-containing protein -
  VNN38_RS04770 (VNN38_04770) - 964178..965143 (-) 966 WP_019292244.1 ROK family glucokinase -
  VNN38_RS04775 (VNN38_04775) - 965136..965348 (-) 213 WP_003133311.1 YqgQ family protein -
  VNN38_RS04780 (VNN38_04780) typA 965668..967509 (+) 1842 WP_019294233.1 translational GTPase TypA -
  VNN38_RS04785 (VNN38_04785) - 967584..967814 (+) 231 WP_019292242.1 DUF3165 family protein -
  VNN38_RS04790 (VNN38_04790) comYH 967860..968795 (+) 936 WP_019292241.1 class I SAM-dependent methyltransferase Machinery gene
  VNN38_RS04795 (VNN38_04795) - 968880..970073 (+) 1194 WP_019294232.1 acetate kinase -
  VNN38_RS04800 (VNN38_04800) - 970192..971385 (+) 1194 WP_019294231.1 acetate kinase -
  VNN38_RS04805 (VNN38_04805) pyrH 971476..972192 (+) 717 WP_019292238.1 UMP kinase -
  VNN38_RS04810 (VNN38_04810) frr 972221..972778 (+) 558 WP_017368646.1 ribosome recycling factor -
  VNN38_RS04815 (VNN38_04815) - 972889..973749 (+) 861 WP_019294230.1 S1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35095.12 Da        Isoelectric Point: 4.6120

>NTDB_id=918368 VNN38_RS04790 WP_019292241.1 967860..968795(+) (comYH) [Lactococcus petauri strain R21-77-2]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRLLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLEPVDVVMSDLPVGYYPDDETASHFQVHDKSEHTYVHHLMVEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=918368 VNN38_RS04790 WP_019292241.1 967860..968795(+) (comYH) [Lactococcus petauri strain R21-77-2]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTAGTTCTTGAGAATATCATGGCAATTCAAGCAGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAATTTGCGTCACTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAATGGCAAAAGCTGTTTCAGTTTGTTTTGCTTCAGGGGTCACGTGTC
GCACCAATGCAGGCAAATCATAATTTAACTCCGGATTCTATTGGTTTCATCTTTAATTTTATCATTGAGGAGTTACACAA
AGAAAGAAAGATTCGTTTACTAGAATTTGGCTCAGGAACGGGGAATTTGGCGGAAACGCTTTTGGTTCACATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATCGATGCCGTTAAACCACAGCCCTTGGAACCTGTGGATGTTGTGATGAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAACAGCCAGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCATTTAATGG
TTGAGCAATCTTTCAAATATCTGAAAGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCTGAGTTTTTGAAGGCTTGGATTAAAGAGCATGCGCATGTTGCTGCAGTTATTACATTACCTTCATCACTCTTTAAAGG
TGCAGGGAAATCAATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTGTCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTTAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(173-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.677

99.678

0.495
  comYH Streptococcus mutans UA159

49.355

99.678

0.492