Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ABXJ52_RS11780 Genome accession   NZ_CP160402
Coordinates   2535362..2537095 (+) Length   577 a.a.
NCBI ID   WP_367041637.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-332     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2530362..2542095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ52_RS11730 (ABXJ52_11730) - 2531158..2531346 (+) 189 WP_367041625.1 hypothetical protein -
  ABXJ52_RS11735 (ABXJ52_11735) - 2531343..2531504 (+) 162 WP_367041627.1 hypothetical protein -
  ABXJ52_RS11740 (ABXJ52_11740) - 2531537..2531788 (+) 252 Protein_2329 SAM-dependent methyltransferase -
  ABXJ52_RS11745 (ABXJ52_11745) - 2531806..2532213 (-) 408 WP_367041629.1 PIN domain nuclease -
  ABXJ52_RS11750 (ABXJ52_11750) - 2532210..2532443 (-) 234 WP_367041631.1 type II toxin-antitoxin system VapB family antitoxin -
  ABXJ52_RS11770 (ABXJ52_11770) - 2533337..2533639 (+) 303 WP_367041633.1 YtxH domain-containing protein -
  ABXJ52_RS11775 (ABXJ52_11775) - 2533702..2535138 (+) 1437 WP_367041635.1 FGGY family carbohydrate kinase -
  ABXJ52_RS11780 (ABXJ52_11780) rcrP 2535362..2537095 (+) 1734 WP_367041637.1 ABC transporter ATP-binding protein Regulator
  ABXJ52_RS11785 (ABXJ52_11785) rcrQ 2537095..2539014 (+) 1920 WP_367041639.1 ABC transporter ATP-binding protein Regulator
  ABXJ52_RS11790 (ABXJ52_11790) - 2539021..2540370 (-) 1350 WP_367041641.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62450.70 Da        Isoelectric Point: 6.2552

>NTDB_id=918253 ABXJ52_RS11780 WP_367041637.1 2535362..2537095(+) (rcrP) [Streptomyces sp. Je 1-332]
MLIRLLRAHLGPYKKPIALLVLLQFLQTCASLYLPTLNADIIDQGVVKGDTGYILSFGGVMIAVTVAQVVCNVGAVYYGA
RTASALGRDVRAAVFDRVQSFSARELGHFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMSVGGIIMALGLDVQLSGV
LVAVVPVLALCVSLIVKRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDAYEKDRFRKANAELTDVSLGTGKLLAL
MFPIVMTVVNISSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PASPVTELRRHGHLEIRDAGFRYPGAEEPVLKAVDLVARPGETTAVIGSTGSGKSTLLSLVPRLIDITEGEVLVDGVPVH
TIEPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEDLWHALEVAQAKGFVESLEEGLGAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVSTIRDADRIIVLDEGRVVGTGRHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=918253 ABXJ52_RS11780 WP_367041637.1 2535362..2537095(+) (rcrP) [Streptomyces sp. Je 1-332]
ATGCTCATACGACTCCTGCGGGCCCACCTAGGCCCGTACAAGAAGCCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCTCGCTCTATCTGCCGACTCTCAACGCCGACATCATCGACCAGGGTGTGGTGAAGGGCGACACGGGCTACA
TCCTGTCGTTCGGCGGCGTCATGATCGCCGTCACCGTCGCCCAGGTGGTCTGCAACGTGGGGGCCGTCTACTACGGCGCC
CGCACCGCGTCCGCGCTCGGCCGCGACGTGCGGGCGGCCGTGTTCGACCGCGTGCAGTCGTTCTCCGCACGCGAGTTGGG
GCACTTCGGCGCACCGTCGTTGATCACCCGGACCACGAACGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGAGCGTCGGCGGCATCATCATGGCCCTCGGTCTCGACGTACAGCTCTCGGGCGTC
CTGGTCGCGGTCGTGCCCGTCCTCGCGCTCTGCGTGAGCCTCATCGTGAAGCGGCTGCGTCCCCTCTTCCGCACCATGCA
GGTGCGCCTGGACACCGTGAACCGCGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACG
CGTACGAGAAGGACCGTTTCCGGAAGGCCAACGCCGAGCTGACCGACGTGTCGCTGGGCACCGGCAAGCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTCGTGAACATCTCGTCGATCGCCGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGTGCGCTCACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCGAGGAGGTCCTGGACACCGAGAGCAGCGTGGTGCCC
CCGGCCTCCCCCGTGACGGAGCTGCGGCGCCACGGCCACCTGGAGATCCGCGACGCGGGCTTCCGCTACCCCGGCGCCGA
GGAGCCCGTCCTGAAGGCCGTGGACCTGGTCGCGCGGCCCGGTGAGACGACCGCCGTGATCGGGTCGACCGGCAGCGGCA
AGTCGACGCTGCTCAGCCTCGTGCCGCGGCTCATCGACATCACCGAGGGCGAGGTCCTGGTGGACGGCGTGCCCGTGCAC
ACCATCGAGCCCGCGCTGCTCGCGCGGACGGTGGGCCTGGTGCCGCAGAAGCCGTACCTCTTCGCCGGCACGGTCGCCAC
CAACCTCCGCTACGGCAACCCGGACGCGACGGACGAGGACCTGTGGCACGCCCTTGAGGTGGCCCAGGCCAAGGGCTTCG
TCGAGAGCCTGGAGGAGGGCCTTGGCGCGCCCATCTCGCAGGGCGGCACGAACGTCTCCGGCGGACAGCGCCAGCGCCTC
GCGATCGCGCGGACGCTCGTACAGCGCCCCGAGATCTATCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACCGA
CGCCGCCCTGCGCGCCGCGCTCGGCCGCGAGACCGCCGAGGCGACCGTCGTGATCGTGGCCCAGCGCGTGTCGACGATCA
GGGACGCCGACCGCATCATCGTCCTCGACGAGGGGCGGGTCGTGGGGACGGGGCGCCATCACGAGCTGATGGAGAGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.821

97.054

0.386