Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABXJ52_RS06245 Genome accession   NZ_CP160402
Coordinates   1340821..1342170 (-) Length   449 a.a.
NCBI ID   WP_367039953.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1335821..1347170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ52_RS06220 (ABXJ52_06220) - 1335868..1336242 (-) 375 WP_367039945.1 DUF6167 family protein -
  ABXJ52_RS06225 (ABXJ52_06225) - 1336250..1336699 (-) 450 WP_367039947.1 DUF948 domain-containing protein -
  ABXJ52_RS06230 (ABXJ52_06230) - 1336860..1339040 (+) 2181 WP_367039948.1 regulator -
  ABXJ52_RS06235 (ABXJ52_06235) rpsD 1339028..1339642 (-) 615 WP_160503779.1 30S ribosomal protein S4 -
  ABXJ52_RS06240 (ABXJ52_06240) - 1340016..1340768 (-) 753 WP_367039951.1 HNH endonuclease family protein -
  ABXJ52_RS06245 (ABXJ52_06245) rarA 1340821..1342170 (-) 1350 WP_367039953.1 replication-associated recombination protein A Machinery gene
  ABXJ52_RS06250 (ABXJ52_06250) - 1342215..1342874 (-) 660 WP_367039955.1 vitamin K epoxide reductase family protein -
  ABXJ52_RS06255 (ABXJ52_06255) hisS 1343022..1344284 (-) 1263 WP_367039957.1 histidine--tRNA ligase -
  ABXJ52_RS06260 (ABXJ52_06260) - 1344298..1345002 (-) 705 WP_367039959.1 MBL fold metallo-hydrolase -
  ABXJ52_RS06265 (ABXJ52_06265) - 1345149..1345970 (+) 822 WP_367039961.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 48000.51 Da        Isoelectric Point: 6.4427

>NTDB_id=918239 ABXJ52_RS06245 WP_367039953.1 1340821..1342170(-) (rarA) [Streptomyces sp. Je 1-332]
MEPDLFTAAAEDRQEKDPSTSPLAVRMRPRTLEEVVGQQHLLKQGSPLRRLVGEGGGGPAGPSSVFLWGPPGIGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIEGARRAMGGHGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLEPLTDDDLRGLLRRALAEERGLGGAVELPEDTEEHLLRISGGDARRALTALEAGAGSAIAKGEKE
ITLQTLEESVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATIAIQSAQADVRAGLAGPVPPHLRDGHYKGAAKLGHAQGYVY
PHDVPGAIAAQQYAPDTVAAKRYYQPTRYGAEARYADVVERVRERLKGE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=918239 ABXJ52_RS06245 WP_367039953.1 1340821..1342170(-) (rarA) [Streptomyces sp. Je 1-332]
GTGGAGCCCGATCTGTTCACCGCAGCCGCCGAGGACCGCCAGGAGAAGGACCCGTCGACGAGTCCCCTGGCCGTCCGGAT
GCGCCCGCGCACCCTGGAAGAAGTCGTCGGCCAGCAGCATCTGCTGAAGCAGGGCTCGCCCCTGCGGAGGCTGGTCGGCG
AGGGCGGCGGAGGACCGGCGGGACCGTCGTCGGTGTTCCTGTGGGGACCGCCCGGCATCGGCAAGACGACCCTTGCCTAC
GTGGTCTCCAAGGCCACGAACAAGCGCTTCGTGGAGCTCTCCGCGATCACCGCCGGAGTGAAGGAAGTCCGCGCGGTCAT
CGAGGGCGCCCGGCGCGCGATGGGCGGCCACGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTACCCGCCGTCGAGAACCGCTGGGTCACGCTCATCGCGGCGACGACCGAGAACCCGTACTTC
TCGATCATCTCCCCGCTCCTGTCCCGCTCCCTCCTCCTCACGCTCGAACCCCTCACGGACGACGACCTGCGCGGGCTGCT
GCGCCGGGCGCTCGCCGAGGAGCGGGGCCTCGGCGGCGCGGTGGAGCTGCCCGAGGACACCGAGGAGCATCTCCTGCGGA
TCTCCGGCGGCGACGCCCGGCGCGCGCTCACCGCCCTGGAGGCCGGCGCGGGCTCGGCTATCGCCAAGGGGGAGAAGGAG
ATCACCCTCCAGACCCTGGAGGAGTCGGTCGACCGCGCGGCCGTGAAGTACGACAGGGACGGCGACCAGCACTACGACGT
CGCGAGCGCCCTGATCAAGTCCATCCGCGGTTCGGACGTGGACGCGGCCCTGCACTACCTGGCCAGGATGATCGAGGCGG
GCGAGGACCCCCGCTTCATCGCACGGCGCCTGATGATCTCCGCGAGCGAGGACATCGGCCTCGCCGACCCCACGGCACTG
CCCACCGCGGTCGCCGCCGCCCAGGCCGTCGCGATGATCGGCTTCCCGGAGGCAGCGCTCACCCTCAGCCACGCGACGAT
CGCCCTCGCCCTGGCCCCGAAGTCGAACGCCGCGACGATCGCCATCCAGTCAGCCCAGGCCGACGTCCGCGCGGGCCTCG
CGGGCCCCGTCCCGCCCCACCTGCGCGACGGGCACTACAAGGGAGCGGCCAAACTCGGCCACGCCCAGGGCTATGTGTAT
CCGCACGACGTGCCGGGCGCGATCGCCGCCCAGCAGTACGCACCGGACACCGTCGCCGCCAAGCGTTACTACCAACCCAC
GCGCTATGGGGCCGAGGCGCGGTACGCGGACGTGGTGGAGCGGGTTCGGGAGCGCCTCAAGGGGGAGTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(200-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.688

95.546

0.437