Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VNN26_RS03475 Genome accession   NZ_CP141690
Coordinates   701320..702111 (-) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus petauri strain R22-11 BR-C     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 696320..707111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN26_RS03455 (VNN26_03455) - 696594..697949 (+) 1356 WP_019293043.1 MATE family efflux transporter -
  VNN26_RS03460 (VNN26_03460) gatB 697963..699396 (-) 1434 WP_019336035.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  VNN26_RS03465 (VNN26_03465) gatA 699398..700870 (-) 1473 WP_019336036.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  VNN26_RS03470 (VNN26_03470) gatC 700870..701175 (-) 306 WP_017368695.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  VNN26_RS03475 (VNN26_03475) codY 701320..702111 (-) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VNN26_RS03480 (VNN26_03480) - 702248..703855 (-) 1608 WP_206888135.1 glycosyltransferase -
  VNN26_RS03485 (VNN26_03485) - 703995..704318 (-) 324 WP_003133632.1 DUF1292 domain-containing protein -
  VNN26_RS03490 (VNN26_03490) ruvX 704333..704761 (-) 429 WP_003133630.1 Holliday junction resolvase RuvX -
  VNN26_RS03495 (VNN26_03495) - 704761..705027 (-) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  VNN26_RS03500 (VNN26_03500) - 705228..706139 (-) 912 WP_019336039.1 aldo/keto reductase -
  VNN26_RS03505 (VNN26_03505) rpmH 706289..706423 (-) 135 WP_003135255.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=918226 VNN26_RS03475 WP_003133634.1 701320..702111(-) (codY) [Lactococcus petauri strain R22-11 BR-C]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=918226 VNN26_RS03475 WP_003133634.1 701320..702111(-) (codY) [Lactococcus petauri strain R22-11 BR-C]
GTGGCTACTTTACTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTTATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTACGACACTTTAGCAAATATCACAATTAACGAGCCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGCTTGGGAACCTTCATCTTAT
GGCGTACAGACGGAAAATTCAGTGATGATGATCTTGTGCTTGCAGAGCTTGCAACAACAGTTATCGGTGTTCAACTTTCA
AATCTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGACACGATGGCTAACATGGCAGTCAATACACTTTCGTATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGAGAAGAAGGACATGTTATTGCTTCAGTCATTGCCGACA
AGATTGGAATTACACGTTCAGTAATCGTTAATGCACTACGTAAGCTTGAATCTGCTGGTGTTATTGAAAGCCGTTCGTTG
GGGATGAAAGGGACTTACCTCAAAGTTCTTAACCAAGGTTTATTTACAAAGCTTGAAGGTCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483