Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB1F71_RS09560 Genome accession   NZ_CP160386
Coordinates   1927637..1928902 (+) Length   421 a.a.
NCBI ID   WP_002262365.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA159 ykuR deletion     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1922637..1933902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F71_RS09525 (AB1F71_09525) - 1923723..1923917 (+) 195 Protein_1825 hypothetical protein -
  AB1F71_RS09530 (AB1F71_09530) - 1923945..1924241 (-) 297 WP_002262359.1 LacI family DNA-binding transcriptional regulator -
  AB1F71_RS09535 (AB1F71_09535) - 1924303..1925046 (-) 744 WP_002262360.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  AB1F71_RS09540 (AB1F71_09540) prmA 1925047..1926000 (-) 954 WP_002262361.1 50S ribosomal protein L11 methyltransferase -
  AB1F71_RS09545 (AB1F71_09545) - 1926228..1926525 (-) 298 Protein_1829 LlsX family protein -
  AB1F71_RS09550 (AB1F71_09550) - 1926538..1927008 (-) 471 WP_002262363.1 DUF3013 family protein -
  AB1F71_RS09555 (AB1F71_09555) - 1927156..1927647 (+) 492 WP_002262364.1 GNAT family N-acetyltransferase -
  AB1F71_RS09560 (AB1F71_09560) rarA 1927637..1928902 (+) 1266 WP_002262365.1 replication-associated recombination protein A Machinery gene
  AB1F71_RS09575 (AB1F71_09575) - 1929309..1931225 (-) 1917 WP_002262366.1 heavy metal translocating P-type ATPase -
  AB1F71_RS09580 (AB1F71_09580) - 1931324..1932118 (+) 795 WP_002262367.1 helix-turn-helix domain-containing protein -
  AB1F71_RS09585 (AB1F71_09585) - 1932303..1933328 (-) 1026 WP_002262368.1 YeiH family protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46370.74 Da        Isoelectric Point: 6.5113

>NTDB_id=918082 AB1F71_RS09560 WP_002262365.1 1927637..1928902(+) (rarA) [Streptococcus mutans strain UA159 ykuR deletion]
MPNNLALRMRPRDISEVIGQKHLVGQGKIISRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGQIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAMQ
AALTDTERGFDFEVKLDDDALDFIAQATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTIIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKAIADLHKSGTIPIPRHLRDGHYAGSKELGNAQDYLYPHAYPEKWVKQQYLPDKLKGANYFTA
NETGKYERALGANKDKIDKLS

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=918082 AB1F71_RS09560 WP_002262365.1 1927637..1928902(+) (rarA) [Streptococcus mutans strain UA159 ykuR deletion]
ATGCCAAATAACCTCGCACTTCGTATGCGCCCTCGAGATATCTCTGAAGTTATCGGACAAAAGCATCTAGTCGGTCAAGG
CAAGATTATTTCGCGAATGGTCACTGCTAACCGTCTGTCTTCCATGATTCTTTATGGCCCTCCCGGAATTGGAAAAACCT
CAATCGCTTCTGCCATCGCTGGTACAACCAAATTTGCCTTTCGTACCTTCAATGCAACAACCGACACTAAAAAACGCCTG
CAGGAAATTGCTGAAGAAGCTAAATTTTCAGGTGGTTTGGTCTTGCTCCTAGATGAAATTCATCGTCTAGATAAAACTAA
GCAAGATTTTCTTCTCCCCTTGTTGGAAAACGGACAAATTATCATGATTGGCGCAACCACTGAAAATCCCTTTTTCTCTG
TCACCCCTGCCATTCGCTCGCGTGTTCAGATTTTTGAGTTAGAGCCATTATCAAATGAGGATATCAAAAAAGCTATGCAA
GCAGCTCTGACAGATACAGAGCGCGGCTTTGATTTTGAAGTCAAATTAGATGATGATGCTCTTGACTTCATTGCGCAAGC
CACCAATGGCGACTTGCGCTCTGCCTATAATTCTCTTGATTTAGCCATCATGTCCACCCAGCCAGATGACAATGGTAGTC
GCCACATCACCTTAGACACTGTTGAAAACAGCCTACAGCGCAGCTACATTACCATGGACAAGGATGGTGATGGCCACTAT
GATGTCTTGTCCGCCTTACAAAAATCTATTCGCGGTTCAGATGTCAATGCCAGCCTTCACTATGCTGCCAGATTAATCGA
AGCTGGTGATCTGCCAAGTCTAGCTAGACGTTTAACCATTATTGCTTACGAAGATATCGGCTTAGCCAATCCTGATGCAC
AGATTCATACAGTGACAGCGCTGGAAGCAGCCCAAAAAATTGGTTTTCCTGAAGCCCGCATTTTAATTGCCAATGTTGTT
ATTGATTTAGCACTCTCACCTAAGTCTAATTCCGCTTATGTTGCTATGGACAAGGCCATTGCAGATCTTCATAAAAGCGG
CACGATCCCTATTCCTCGCCACTTACGTGATGGTCATTACGCTGGCAGTAAAGAATTGGGCAATGCCCAAGATTATCTCT
ACCCGCATGCCTATCCGGAAAAATGGGTTAAGCAGCAATATTTACCAGACAAACTCAAAGGAGCTAACTATTTTACTGCC
AATGAAACAGGTAAATACGAACGGGCACTGGGGGCTAACAAAGACAAGATTGATAAACTTTCATAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-414)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.135

98.812

0.584