Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   VNN35_RS05490 Genome accession   NZ_CP141687
Coordinates   1103786..1104721 (-) Length   311 a.a.
NCBI ID   WP_019292241.1    Uniprot ID   A0AAJ2IZ38
Organism   Lactococcus petauri strain UCD-JR1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1098786..1109721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN35_RS05465 (VNN35_05465) - 1098832..1099692 (-) 861 WP_206888026.1 S1 RNA-binding domain-containing protein -
  VNN35_RS05470 (VNN35_05470) frr 1099803..1100360 (-) 558 WP_017368646.1 ribosome recycling factor -
  VNN35_RS05475 (VNN35_05475) pyrH 1100389..1101105 (-) 717 WP_019292238.1 UMP kinase -
  VNN35_RS05480 (VNN35_05480) - 1101196..1102389 (-) 1194 WP_165720166.1 acetate kinase -
  VNN35_RS05485 (VNN35_05485) - 1102508..1103701 (-) 1194 WP_019294232.1 acetate kinase -
  VNN35_RS05490 (VNN35_05490) comYH 1103786..1104721 (-) 936 WP_019292241.1 class I SAM-dependent methyltransferase Machinery gene
  VNN35_RS05495 (VNN35_05495) - 1104767..1104997 (-) 231 WP_019292242.1 DUF3165 family protein -
  VNN35_RS05500 (VNN35_05500) typA 1105072..1106913 (-) 1842 WP_206888029.1 translational GTPase TypA -
  VNN35_RS05505 (VNN35_05505) - 1107234..1107446 (+) 213 WP_003133311.1 YqgQ family protein -
  VNN35_RS05510 (VNN35_05510) - 1107439..1108404 (+) 966 WP_061414320.1 ROK family glucokinase -
  VNN35_RS05515 (VNN35_05515) - 1108424..1108804 (+) 381 WP_019292245.1 rhodanese-like domain-containing protein -
  VNN35_RS05520 (VNN35_05520) - 1108843..1109289 (-) 447 WP_003133306.1 Dps family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35095.12 Da        Isoelectric Point: 4.6120

>NTDB_id=918075 VNN35_RS05490 WP_019292241.1 1103786..1104721(-) (comYH) [Lactococcus petauri strain UCD-JR1]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRLLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLEPVDVVMSDLPVGYYPDDETASHFQVHDKSEHTYVHHLMVEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=918075 VNN35_RS05490 WP_019292241.1 1103786..1104721(-) (comYH) [Lactococcus petauri strain UCD-JR1]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTAGTTCTTGAGAATATTATGGCAATTCAAGCAGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAATTTGCGTCACTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAATGGCAAAAGCTGTTTCAGTTTGTTTTGCTTCAGGGGTCACGTGTC
GCACCAATGCAGGCAAATCATAATTTAACTCCGGATTCTATTGGTTTCATCTTTAATTTTATCATTGAGGAGTTACACAA
AGAAAGAAAGATTCGTTTACTAGAATTTGGCTCAGGAACGGGGAATTTGGCGGAAACGCTTTTGGTTCACATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATCGATGCCGTTAAACCACAGCCCTTGGAACCTGTGGATGTTGTGATGAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAACAGCCAGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCATTTAATGG
TTGAGCAATCTTTCAAATATCTGAAAGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCTGAGTTTTTGAAGGCTTGGATTAAAGAGCATGCGCATGTTGCTGCAGTTATTACATTACCTTCATCACTCTTTAAAGG
TGCAGGGAAATCAATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTGTCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTTAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(173-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.677

99.678

0.495
  comYH Streptococcus mutans UA159

49.355

99.678

0.492