Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV20_RS15955 Genome accession   NZ_AP025470
Coordinates   3526238..3526951 (+) Length   237 a.a.
NCBI ID   WP_202910128.1    Uniprot ID   -
Organism   Vibrio coralliirubri strain DSM 27495     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3521238..3531951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS15940 - 3521987..3524317 (+) 2331 WP_086774471.1 Tex family protein -
  OCV20_RS15945 - 3524555..3525028 (-) 474 WP_048618565.1 hypothetical protein -
  OCV20_RS15950 bioH 3525368..3526144 (-) 777 WP_050652718.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV20_RS15955 comF 3526238..3526951 (+) 714 WP_202910128.1 ComF family protein Machinery gene
  OCV20_RS15960 nfuA 3527061..3527645 (+) 585 WP_029405734.1 Fe-S biogenesis protein NfuA -
  OCV20_RS15965 nudE 3527945..3528496 (+) 552 WP_086774470.1 ADP compounds hydrolase NudE -
  OCV20_RS15970 cysQ 3528533..3529360 (+) 828 WP_048612454.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV20_RS15975 - 3529462..3530241 (-) 780 WP_086774469.1 type II secretion system protein N -
  OCV20_RS15980 - 3530243..3530731 (-) 489 WP_086774468.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27140.54 Da        Isoelectric Point: 9.4665

>NTDB_id=91801 OCV20_RS15955 WP_202910128.1 3526238..3526951(+) (comF) [Vibrio coralliirubri strain DSM 27495]
MLSDWLQKHTPRLVTPQCHLCKLDKLPSDKHPRWCNSCLKLFEPVPRCQRCGLKTVTTVEQCGECLSKPPPWHRLYCVGD
YTFPTAGYIQQMKYADKFWFARDLSKLLASRIEHPAPLITSVPLHWRRYTHRGFNQSQLLANYTAQELGVKSDVLFRRIR
STASQQGLTKSARLHNLKSAFALRKQDFQGTIPSHLAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=91801 OCV20_RS15955 WP_202910128.1 3526238..3526951(+) (comF) [Vibrio coralliirubri strain DSM 27495]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACCTGTGCAAACTCGATAAACTGCC
CAGTGATAAACACCCTCGATGGTGCAATTCTTGTCTCAAACTCTTTGAGCCAGTGCCACGCTGTCAGCGATGTGGCTTAA
AAACAGTCACCACTGTCGAACAATGTGGCGAGTGCTTATCAAAACCACCACCGTGGCATCGCCTCTACTGTGTCGGCGAC
TACACCTTCCCTACAGCAGGTTATATTCAGCAAATGAAGTACGCTGATAAGTTTTGGTTTGCACGTGATCTATCTAAGCT
ATTGGCATCACGTATCGAACACCCTGCTCCGCTGATCACCAGCGTGCCCCTGCATTGGCGCCGATACACTCATCGCGGCT
TTAATCAAAGTCAGCTGCTAGCCAATTACACGGCTCAAGAGCTTGGCGTTAAAAGTGATGTGTTATTTCGTCGAATTCGC
TCAACTGCTTCGCAGCAGGGGCTGACTAAATCCGCACGATTACACAATCTAAAGAGTGCTTTTGCGCTGCGAAAACAAGA
CTTTCAAGGAACTATCCCCTCTCACCTCGCGATAATTGATGATGTTGTAACCACTGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.508

99.578

0.553
  comF Vibrio campbellii strain DS40M4

50.612

100

0.523

Multiple sequence alignment